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Journal Articles

High Resolution HLA Typing by Next Generation Exome Sequencing

Chang Liu, MD, PhD, Yang Xiao, PhD, Brian Duffy, MA, Michael Zody, PhD, Eric Tycksen, BA, Savita Shrivastava, MS, Rakesh Nagarajan, MD, PhD, Brenda J. Grossman, MD, MPH, Thalachallour Mohanakumar, PhD, Mitra D Robi, PhD, John D Pfeifer, MD, PhD

Blood (2012) 120 (21): 4166.

https://doi.org/10.1182/blood.V120.21.4166.4166

Published: 2012

Journal Articles

Genomic Landscape of Immunoglobulin Light Chain (AL) Amyloidosis and Comparative Analyses with Related Malignant Plasma Cell Disorder- Multiple Myeloma

Vishwanathan Hucthagowder, PhD, Jahangheer Shaik, PhD, Mark Fiala, BS, Jacob Paasch, BS, Rakesh Nagarajan, MD, PhD, Keith E. Stockerl-Goldstein, MD, John F. DiPersio, MD, PhD, Michael H. Tomasson, MD, Ravi Vij, MD, Shashikant Kulkarni, PhD

Blood (2011) 118 (21): 809.

https://doi.org/10.1182/blood.V118.21.809.809

Published: 2011

Journal Articles

Complete Sequencing and Comparison of 12 Normal Karyotype M1 AML Genomes with 12 t(15;17) Positive M3-APL Genomes

Blood (2011) 118 (21): 404.

https://doi.org/10.1182/blood.V118.21.404.404

Published: 2011

Journal Articles

Rara haploinsufficiency modestly influences the phenotype of acute promyelocytic leukemia in mice

John S. Welch, Jeffery M. Klco, Nobish Varghese, Rakesh Nagarajan, Timothy J. Ley

Blood (2011) 117 (8): 2460–2468.

https://doi.org/10.1182/blood-2010-08-300087

Published: 2011

Includes: Supplemental data

Journal Articles

Complete characterization of the microRNAome in a patient with acute myeloid leukemia

Giridharan Ramsingh, Daniel C. Koboldt, Maria Trissal, Katherine B. Chiappinelli, Todd Wylie, Sunita Koul, Li-Wei Chang, Rakesh Nagarajan, Todd A. Fehniger, Paul Goodfellow, Vincent Magrini, Richard K. Wilson, Li Ding, Timothy J. Ley, Elaine R. Mardis, Daniel C. Link

Blood (2010) 116 (24): 5316–5326.

https://doi.org/10.1182/blood-2010-05-285395

Published: 2010

Includes: Supplemental data

Journal Articles

The NK Cell MicroRNA Transcriptome Defined by Next-Generation Sequencing Identifies IL-15-Signaled Alterations In Mature MiR-223 Expression, and MiR-223 as a Potential Regulator of Murine Granzyme B

Todd A Fehniger, MD, PhD, Todd Wylie, Elizabeth Germino, Jeffrey W Leong, Vincent J Magrini, PhD, Sunita Koul, Catherine R Keppel, Stephanie E Schneider, Daniel C Koboldt, MS, Ryan P Sullivan, Michael E Heinz, Seth D Crosby, MD, Rakesh Nagarajan, MD, PhD, Giridharan Ramsingh, MD, Daniel C Link, MD, Timothy J Ley, MD, Elaine R Mardis, PhD

Blood (2010) 116 (21): 104.

https://doi.org/10.1182/blood.V116.21.104.104

Published: 2010

Journal Articles

DNA Sequence of the Cancer Genome of a Patient with Therapy-Related Acute Myeloid Leukemia

Blood (2010) 116 (21): 580.

https://doi.org/10.1182/blood.V116.21.580.580

Published: 2010

Journal Articles

Mutations In the DNA Methyltransferase Gene DNMT3A Are Highly Recurrent In Patients with Intermediate Risk Acute Myeloid Leukemia, and Predict Poor Outcomes

Timothy J Ley, MD, Li Ding, PhD, Matthew J. Walter, MD, Michael D. McLellan, BS, Tamara Lamprecht, BS, David E. Larson, PhD, Cyriac Kandoth, PhD, Jacqueline E. Payton, MD, PhD, Jack Baty, BA, John S. Welch, MD, PhD, Christopher C. Harris, BS, Cheryl F. Lichti, PhD, R. Reid Townsend, MD, Robert S. Fulton, MS, David J. Dooling, PhD, Daniel C. Koboldt, MS, Heather Schmidt, BS, Qunyuan Zhang, PhD, John R. Osborne, BS, Ling Lin, MS, Michelle O'Laughlin, BS, Joshua F. McMichael, BS, Kim D. Delehaunty, BA, Sean D. McGrath, MS, Lucinda A. Fulton, MS, Vincent J. Magrini, PhD, Tammi L. Vickery, BS, Jasreet Hundal, MS, Lisa L. Cook, Joshua J. Conyers, Gary W. Swift, BS, Jerry P. Reed, MS, Patricia A. Alldredge, MS, Todd Wylie, BS, Jason Walker, BA, BS, Joelle Kalicki-Veizer, BS, Mark A. Watson, MD, PhD, Sharon Heath, William D. Shannon, PhD, Nobish Varghese, MS, Rakesh Nagarajan, MD, PhD, Peter Westervelt, MD, PhD, Michael H. Tomasson, MD, Daniel C. Link, MD, Timothy A. Graubert, MD, John F. DiPersio, MD, PhD, Elaine R. Mardis, PhD, Richard K. Wilson, PhD

Blood (2010) 116 (21): 99.

https://doi.org/10.1182/blood.V116.21.99.99

Published: 2010

Journal Articles

Resequencing Analysis of the Human Candidate Ras and Receptor Tyrosine Kinase Gene Family In Multiple Myeloma

Vishwanathan Hucthagowder, PhD, Chelsea D. Mullins, BSci, Rekha Meyer, PhD, Rakesh Nagarajan, MD, PhD, John F. DiPersio, MD, PhD, Ravi Vij, MBBS, MD, Michael H. Tomasson, MD, Shashikant Kulkarni, PhD, FACMG

Blood (2010) 116 (21): 301.

https://doi.org/10.1182/blood.V116.21.301.301

Published: 2010

Journal Articles

Chromatin Immunoprecipitation of GFP-Tagged PML-Rara Coupled to High-Throughput Next Generation Sequencing.

Nicole R. Grieselhuber, Jahangheer S. Shaik, PhD, Li-Wei Chang, PhD, Sean McGrath, Lukas D. Wartman, MD, Rakesh Nagarajan, MD, PhD, Richard K. Wilson, PhD, Elaine Mardis, PhD, Timothy J. Ley, MD

Blood (2009) 114 (22): 1276.

https://doi.org/10.1182/blood.V114.22.1276.1276

Published: 2009

Journal Articles

Comprehensive Evaluation of MicroRNA Genes and Gene Expression Using Next Generation Sequencing in a Patient with Acute Myelogenous Leukemia.

Giridharan Ramsingh, MD, Dan C Koboldt, M.S, Todd A Fehniger, MD, PhD, Todd Wylie, B.S, Vincent Magrini, Ph.D, Maria Trissal, B.S, Sunita Koul, MCA, Li-Wei Chang, PhD, Rakesh Nagarajan, MD, PhD, Timothy J. Ley, MD, Elaine Mardis, PhD, Daniel C. Link, MD

Blood (2009) 114 (22): 271.

https://doi.org/10.1182/blood.V114.22.271.271

Published: 2009

Journal Articles

Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia

Blood (2008) 111 (9): 4797–4808.

https://doi.org/10.1182/blood-2007-09-113027

Published: 2008

Includes: Supplemental data

Journal Articles

Identification of somatic JAK1 mutations in patients with acute myeloid leukemia

Blood (2008) 111 (9): 4809–4812.

https://doi.org/10.1182/blood-2007-05-090308

Published: 2008

Includes: Supplemental data

Journal Articles

The Expression Signature of M3 AML Suggests Direct and Indirect Effects of PML-RARA on Target Genes.

Jacqueline E. Payton, MD, PhD, Nicole R. Grieselhuber, BS, Li-Wei Chang, PhD, Mark A. Murakami, MS, Wenlin Yuan, PhD, Daniel C. Link, MD, Rakesh Nagarajan, MD, PhD, Mark A. Watson, MD, PhD, Timothy J. Ley, MD

Blood (2007) 110 (11): 719.

https://doi.org/10.1182/blood.V110.11.719.719

Published: 2007

Journal Articles

Distinct patterns of mutations occurring in de novo AML versus AML arising in the setting of severe congenital neutropenia

Blood (2007) 110 (5): 1648–1655.

https://doi.org/10.1182/blood-2007-03-081216

Published: 2007

Includes: Supplemental data

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High Resolution HLA Typing by Next Generation Exome Sequencing

Genomic Landscape of Immunoglobulin Light Chain (AL) Amyloidosis and Comparative Analyses with Related Malignant Plasma Cell Disorder- Multiple Myeloma

Complete Sequencing and Comparison of 12 Normal Karyotype M1 AML Genomes with 12 t(15;17) Positive M3-APL Genomes

Rara haploinsufficiency modestly influences the phenotype of acute promyelocytic leukemia in mice

Complete characterization of the microRNAome in a patient with acute myeloid leukemia

The NK Cell MicroRNA Transcriptome Defined by Next-Generation Sequencing Identifies IL-15-Signaled Alterations In Mature MiR-223 Expression, and MiR-223 as a Potential Regulator of Murine Granzyme B

DNA Sequence of the Cancer Genome of a Patient with Therapy-Related Acute Myeloid Leukemia

Mutations In the DNA Methyltransferase Gene DNMT3A Are Highly Recurrent In Patients with Intermediate Risk Acute Myeloid Leukemia, and Predict Poor Outcomes

Resequencing Analysis of the Human Candidate Ras and Receptor Tyrosine Kinase Gene Family In Multiple Myeloma

Chromatin Immunoprecipitation of GFP-Tagged PML-Rara Coupled to High-Throughput Next Generation Sequencing.

Comprehensive Evaluation of MicroRNA Genes and Gene Expression Using Next Generation Sequencing in a Patient with Acute Myelogenous Leukemia.

Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia

Identification of somatic JAK1 mutations in patients with acute myeloid leukemia

The Expression Signature of M3 AML Suggests Direct and Indirect Effects of PML-RARA on Target Genes.

Distinct patterns of mutations occurring in de novo AML versus AML arising in the setting of severe congenital neutropenia

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American Society of Hematology