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Journal Articles

Integrated Coding and Non-Coding Transcriptional Single-Cell Atlas of Multiple Myeloma: Unraveling the Effects of Myeloma Genotype on the Bone Marrow Microenvironment

Marina E Michaud, Sarthak Satpathy, William Pilcher, Edgar Gonzalez-Kozlova, Dimitra Karagkouni, Lijun Yao, Yered Pita-Juarez, Chaitanya Acharya, Mark Hamilton, Shivani Nanda, Yizhe Song, Julia T Wang, Mojtaba Bakhtiari, David Avigan, Taxiarchis Kourelis, Madhav V. Dhodapkar, Sagar Lonial, Swati Bhasin, Immune Network, Li Ding, Sacha Gnjatic, Ioannis S Vlachos, George Mulligan, Manoj Bhasin
Journal: Blood
Blood (2024) 144 (Supplement 1): 3258.
https://doi.org/10.1182/blood-2024-211579
Published: 2024
Journal Articles

In-Depth Characterization of the High Risk-Associated Tumor Immune Landscape in Multiple Myeloma

Yered Pita-Juarez, Dimitra Karagkouni, Edgar Gonzalez-Kozlova, Yuling Ma, Lijun Yao, William Pilcher, Beena Thomas, Alessandro Lagana, Sarthak Satpathy, Swati Bhasin, Yizhe Song, Ravi Vij, Darwin D'Souza, Travis Dawson, Geoffrey Kelly, Jessica Wendy Schulman, Shaji Kunnathu Kumar, David Avigan, Seunghee Kim-Schulze, Li Ding, Hearn Jay Cho, Taxiarchis Kourelis, Eva Lepisto, Manoj Bhasin, April Cook, Mark Hamilton, George Mulligan, Immune Network, Ioannis Vlachos, Sacha Gnjatic
Journal: Blood
Blood (2023) 142 (Supplement 1): 648.
https://doi.org/10.1182/blood-2023-189940
Published: 2023
Journal Articles

Single-Cell RNA-Seq Analysis of CD138-Depleted Bone Marrow Samples Reveals Genetic Alterations and Disease Progression Correlate with Tumor and Bone Marrow Immune Microenvironment in the Mmrf Commpass Study

Lijun Yao, Tianjiao Wang, Sato Kazuhiro, Reyka G Jayasinghe, William Pilcher, Edgar Gonzalez-Kozlova, Yered Pita-Juarez, Taxiarchis Kourelis, Deon Doxie, Beena E Thomas, Brian Lee, Swati S Bhasin, Bhaskar Upadhyaya, Mark A Fiala, Julie Fortier, Travis Dawson, John Leech, Shaji Kumar, Hearn Jay Cho, Seunghee Kim-Schulze, Bee Raj, Stephen T. Oh, John F. DiPersio, Ravi Vij, Adeeb H Rahman, Ioannis Vlachos, Shaadi Mehr, Mark Hamilton, Daniel Auclair, Surendra Dasari, David Avigan, Madhav V Dhodapkar, Sacha Gnjatic, Manoj Bhasin, Li Ding
Journal: Blood
Blood (2021) 138 (Supplement 1): 2691.
https://doi.org/10.1182/blood-2021-154081
Published: 2021
Journal Articles

Identification and Validation of CD138- Multiple Myeloma Immune and Tumor Subpopulations Using Cross Center Scrna-Seq Data

Reyka G Jayasinghe, PhD, Lijun Yao, MS, Beena Thomas, Swati S Bhasin, PhD, Nicolas Fernandez, PhD, David E. Avigan, MD, Taxiarchis Kourelis, MD, Madhav V. Dhodapkar, MD, Ravi Vij, MD MBA, Shaadi Mehr, PhD, Mark Hamilton, PhD, Hearn Jay Cho, MD PhD, Daniel Auclair, Sacha Gnjatic, Li Ding, PhD
Journal: Blood
Blood (2020) 136 (Supplement 1): 15.
https://doi.org/10.1182/blood-2020-143256
Published: 2020
Journal Articles

Architecture of Sample Preparation and Data Governance of Immuno-Genomic Data Collected from Bone Marrow and Peripheral Blood Samples Obtained from Multiple Myeloma Patients

Shaadi Mehr, PhD, Daniel Auclair, Mark Hamilton, PhD, Leon Rozenblit, Hearn Jay Cho, MD PhD, Lijun Yao, MS, Reyka G Jayasinghe, PhD, Manoj Bhasin, PhD, Steven E. Labkoff, MD, Taxiarchis Kourelis, MD, Madhav V. Dhodapkar, MD, Deon Doxie, Sacha Gnjatic, Cassandra Dewitt, Sergey Miron
Journal: Blood
Blood (2020) 136 (Supplement 1): 17–18.
https://doi.org/10.1182/blood-2020-142882
Published: 2020
Journal Articles

Myeloma Cell Associated Therapeutic Protein Discovery Using Single Cell RNA-Seq Data

Lijun Yao, MS, Reyka G Jayasinghe, PhD, Tianjiao Wang, BA, Julie O'Neal, PhD, Ruiyang Liu, BS, Michael P. Rettig, PhD, Chia-Feng Tsai, PhD, Steven M. Foltz, BS, MS, Danny Kohnen, MBA, Smrithi Mani, BS, Fernanda Martins Rodrigues, MSc, Michael C. Wendl, D SC, MS, PHS, Matthew A. Wyczalkowski, PhD, Scott R. Goldsmith, MD, Ying Zhu, PhD, Mark A Fiala, MSW, Liu Tao, BS, PhD, Ravi Vij, MD MBA, Li Ding, PhD, John F. DiPersio, MD PhD
Journal: Blood
Blood (2020) 136 (Supplement 1): 4–5.
https://doi.org/10.1182/blood-2020-142205
Published: 2020
Journal Articles

Integrated Cytof, Scrna-Seq and Cite-Seq Analysis of Bone Marrow Immune Microenvironment in the Mmrf Commpass Study

Lijun Yao, MS, Reyka G Jayasinghe, PhD, Beena E Thomas, Swati S Bhasin, PhD, Nicolas Fernandez, PhD, Taxiarchis Kourelis, MD, Deon Doxie, David E. Avigan, MD, Madhav V. Dhodapkar, MD, Shaji K. Kumar, MD, Ravi Vij, MBBS, Shaadi Mehr, PhD, Mark Hamilton, PhD, Hearn Jay Cho, MD PhD, Daniel Auclair, Sacha Gnjatic, PhD, Manoj Bhasin, PhD, Li Ding, PhD
Journal: Blood
Blood (2020) 136 (Supplement 1): 28–29.
https://doi.org/10.1182/blood-2020-142534
Published: 2020
Journal Articles

Single-Cell Pathway Enrichment and Regulatory Profiling of Multiple Myeloma across Disease Stages

Tianjiao Wang, BA, Hua Sun, PhD, Daniel Cui Zhou, BA, Ruiyang Liu, BS, Lijun Yao, MS, Mark A. Fiala, MSW, Daniel R. Kohnen, MBA, Julie O'Neal, PhD, Michael P. Rettig, PhD, Jared S Fowles, PhD, Stephen T. Oh, MD, Reyka G Jayasinghe, PhD, Ravi Vij, MBBS, John F. DiPersio, MD PhD, Li Ding, PhD
Journal: Blood
Blood (2019) 134 (Supplement_1): 364.
https://doi.org/10.1182/blood-2019-131361
Published: 2019
Journal Articles

Single-Cell Transcriptomic and Proteomic Diversity in Multiple Myeloma

Reyka G Jayasinghe, PhD, Yige Wu, BS, Ying Zhu, PhD, Ruiyang Liu, BS, Mark A. Fiala, BS, Daniel R. Kohnen, MBA, Chia-Feng Tsai, PhD, Smrithi Mani, BS, Justin King, BS, Michael P. Rettig, PhD, Julie O'Neal, PhD, Tianjiao Wang, BA, Steven M. Foltz, BS, MS, Lijun Yao, MS, Hua Sun, PhD, Catrina Fronick, BS, Scott R. Goldsmith, MD, John F. DiPersio, MD PhD, Ravi Vij, MBBS, Liu Tao, BS, PhD, Li Ding, PhD
Journal: Blood
Blood (2019) 134 (Supplement_1): 5531.
https://doi.org/10.1182/blood-2019-131005
Published: 2019
Journal Articles

Comprehensive Multi-Omics Analysis of Gene Fusions in a Large Multiple Myeloma Cohort

Steven M. Foltz, MS, Qingsong Gao, PhD, Christopher J. Yoon, MPhil, Amila Weerasinghe, PhD, Hua Sun, PhD, Lijun Yao, MS, Mark A. Fiala, BS, Daniel R. Kohnen, MBA, Justin King, BS, Yeong Seok Ju, MD PhD, John F. DiPersio, MD PhD, Ravi Vij, MBBS, Li Ding, PhD
Journal: Blood
Blood (2018) 132 (Supplement 1): 1898.
https://doi.org/10.1182/blood-2018-99-117245
Published: 2018