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Christopher C Oakes, PhD
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Journal Articles

Meta-Analysis of Genome-Wide Association Studies of Acute Myeloid Leukemia (AML) Patients Identifies Variants Associated with Risk of 11q23/ KMT2A -Translocated and Core-Binding Factor (CBF) AML and Suggests a Role for Transcription Elongation in Leukemogenesis

Christopher J. Walker, PhD, Junke Wang, MS, Alyssa I. Clay-Gilmour, PhD, Krzysztof Mrózek, MDPhD, Deedra Nicolet, MS, Christopher C. Oakes, PhD, Jessica Kohlschmidt, PhD, Bayard L. Powell, MD, Jonathan E. Kolitz, MD, Andrew J Carroll, PhD, Ezgi Karaesmen, PhD, Abbas A. Rizvi, PhD MS, Qianqian Zhu, PhD, Li Yan, PhD, Leah Preus, MS, Song Liu, PhD, Yiwen Wang, Daniel O. Stram, PhD, Loreall Pooler, Xin Sheng, MS, Christopher Haiman, David Van Den Berg, PhD, Amy Webb, PhD, Guy Brock, PhD, Stephen R. Spellman, MS, Marcelo C. Pasquini, MDMS, Philip L. McCarthy, MD, James M. Allan, Friedrich Stolzel, MD, Kenan Onel, MDPhD, Richard M. Stone, MD, Ramiro Garzon, MD, Clara D. Bloomfield, MD, John C. Byrd, MD, Albert de la Chapelle, MD PhD, Theresa E. Hahn, PhD, Ann-Kathrin Eisfeld, MD, Lara E. Sucheston-Campbell, PhDMS
Journal: Blood
Blood (2020) 136 (Supplement 1): 29–30.
https://doi.org/10.1182/blood-2020-141653
Published: 2020
Journal Articles

Clinical and Prognostic Implications of PTPN11 Mutations in Acute Myeloid Leukemia (Alliance)

Sydney Fobare, Jessica Kohlschmidt, PhD, Hatice Gulcin Ozer, PhD, Krzysztof Mrózek, MDPhD, Deedra Nicolet, MS, Alice S. Mims, MD, Ramiro Garzon, MD, James S. Blachly, MD, Shelley Orwick, BS, Andrew J Carroll, PhD, Richard M. Stone, MD, Eunice S. Wang, MD, Jonathan E. Kolitz, MD, Bayard L. Powell, MD, Christopher C. Oakes, PhD, Ann-Kathrin Eisfeld, MD, Erin Hertlein, PhD, John C. Byrd, MD
Journal: Blood
Blood (2020) 136 (Supplement 1): 20–21.
https://doi.org/10.1182/blood-2020-135887
Published: 2020
Journal Articles

Developmental DNA Methylation Subtype Predicts Progression to Treatment and Survival in High-Count Monoclonal B Lymphocytosis

Brian Giacopelli, BS, Kari G. Chaffee, MS, Yue-zhong Wu, MSc, John C. Byrd, MD, Tait D. Shanafelt, MD, Sameer A. Parikh, MD, Esteban Braggio, PhD, Susan L. Slager, PhD, Neil E. Kay, MD, Christopher C. Oakes, PhD
Journal: Blood
Blood (2019) 134 (Supplement_1): 3022.
https://doi.org/10.1182/blood-2019-123564
Published: 2019
Journal Articles

Single-Cell Analysis Based Dissection of Clonality in Myelofibrosis

Elena Mylonas, Kenichi Yoshida, MD PhD, Mareike Frick, Kaja Hoyer, Friederike Christen, Jaspal Kaeda, PhD FRCPath, Matthias Obenaus, Daniel Nörenberg, MD, Cornelius Hennch, Willy Chan, Yotaro Ochi, MD, Yuichi Shiraishi, Yusuke Shiozawa, MD PhD, Thorsten Zenz, MD, Christopher C. Oakes, PhD, Birgit Sawitzki, Michaela Schwarz, MD, Lars Bullinger, Philipp Le Coutre, MD, Matthew John Jerome Rose-Zerilli, Seishi Ogawa, MD PhD, Frederik Damm, MD
Journal: Blood
Blood (2019) 134 (Supplement_1): 469.
https://doi.org/10.1182/blood-2019-123367
Published: 2019
Journal Articles

Personalized Oncology in Acute Myeloid Leukemia (AML): Validation of the Prognostic Value of the Knowledge Bank Algorithm in Patients (Pts) Treated on Cancer and Leukemia Group B (CALGB)/Alliance Protocols

Marius Bill, MD PhD, Krzysztof Mrózek, MD PhD, Jessica Kohlschmidt, PhD, Deedra Nicolet, MS, Brian Giacopelli, BS, Christopher J. Walker, PhD, Dimitrios Papaioannou, MD, Ann-Kathrin Eisfeld, MD, Jonathan E. Kolitz, MD, Bayard L Powell, MD, Andrew J. Carroll, PhD, Richard M. Stone, MD, John C. Byrd, MD, Ramiro Garzon, MD, Christopher C. Oakes, PhD, Clara D. Bloomfield, MD
Journal: Blood
Blood (2019) 134 (Supplement_1): 182.
https://doi.org/10.1182/blood-2019-128623
Published: 2019
Journal Articles

DNA Methylation-Based Classification Highlights the Role of the JAK-STAT Pathway in Acute Myeloid Leukemia

Brian Giacopelli, BS, Min Wang, Ada C Cleary, Yue-zhong Wu, MSc, Anna Reister Schultz, James S. Blachly, MD, Ann-Kathrin Eisfeld, MD, Kevin R Coombes, Clara D. Bloomfield, MD, Brian J. Druker, Jeffrey W. Tyner, John C. Byrd, MD, Christopher C. Oakes, PhD
Journal: Blood
Blood (2019) 134 (Supplement_1): 1413.
https://doi.org/10.1182/blood-2019-126212
Published: 2019
Journal Articles

Clinical Importance of DNA Methylation Signatures in Chronic Lymphocytic Leukaemia Patients Treated with Chemo-Immunotherapy

Harindra Amarasinghe, PhD, Tomasz K Wojdacz, PhD MSc, Matthew John Jerome Rose-Zerilli, PhD, Alice Beattie, Jade Forster, PhD, Latha Kadalayil, Stuart Blakemore, PhD, Helen Parker, PhD, Marta Larrayoz, PhD, Ruth Clifford, Zadie Davis, Monica Else, Dena Cohen, Andrew J Steele, PhD, Richard Rosenquist, MD PhD, Andrew Collins, Andrew Pettitt, FRCPath, PhD, Peter Hillmen, MBChB, PhD, Pauline Robbe, MSc, Christopher Plass, Anna Schuh, MD PhD, Daniel Catovsky, MD FRCP, David Oscier, MD PhD, Christopher C. Oakes, PhD, Jonathan C Strefford, PhD
Journal: Blood
Blood (2017) 130 (Supplement 1): 56.
https://doi.org/10.1182/blood.V130.Suppl_1.56.56
Published: 2017
Journal Articles

Genomic Analysis of Hairy Cell Leukemia Identifies Novel Recurrent Genetic Alterations

Benjamin H Durham, MD BS, Bartlomiej Getta, FRCPA, FRACP, MBBS, Sascha Dietrich, MD, Justin Taylor, MD, Helen Won, PhD, James M. Bogenberger, PhD, Sasynia N Scott, PhD, Eunhee Kim, PhD, Young Rock Chung, MS, Stephen S. Chung, MD, Jennifer Hüllein, PhD, Tatjana Walther, PhD, Lu Wang, PhD, Sydney X. Lu, MDPhD, Christopher C. Oakes, PhD, Raoul Tibes, MD PhD, Torsten Haferlach, MD, Barry S Taylor, PhD, Martin S. Tallman, MD, Michael F. Berger, PhD, Jae H. Park, MD, Thorsten Zenz, MD, Omar Abdel-Wahab, MD
Journal: Blood
Blood (2017) 130 (Supplement 1): 2994.
https://doi.org/10.1182/blood.V130.Suppl_1.2994.2994
Published: 2017
Journal Articles

Malignant NK Cells from EBV(+) Human Extranodal NK/T Cell Lymphoma Exhibit Features of a Distinct NK Cell Developmental Subset Found in Mucosal Associated Lymphoid Tissue

Anjali Mishra, PhD, Bethany L Mundy-Bosse, PhD, Karen A Young, Christoph Weigel, PhD, Emily Smith, Ahmed Elshafa, Youssef Youssef, Kathleen McConnell, Christoph Plass, PhD, Jonathan E Brammer, MD, Robert A Baiocchi, MD PhD, Michael A. Caligiuri, MD, Pierluigi Porcu, MD, Aharon G. Freud, MD PhD, Christopher C. Oakes, PhD
Journal: Blood
Blood (2017) 130 (Supplement 1): 1451.
https://doi.org/10.1182/blood.V130.Suppl_1.1451.1451
Published: 2017
Journal Articles

Role of Histone Deacetylase-Mediated Gene Silencing in Chronic Lymphocytic Leukemia Progression

Lara Rizzotto, PhD, Arianna Bottoni, PhD, Tzung-Huei Lai, PhD, Chaomei Liu, BS, Pearlly S Yan, PhD, Hatice G Ozer, PhD, Rosa Lapalombella, PhD, Jennifer A. Woyach, MD, Christopher C Oakes, PhD, James S. Blachly, MD, Deepa Sampath, PhD
Journal: Blood
Blood (2016) 128 (22): 2705.
https://doi.org/10.1182/blood.V128.22.2705.2705
Published: 2016
Journal Articles

Aberrant Methylation and Decreased Expression of NRIP1 in IGHV -Unmutated CLL

Madelyn Gerber, PhD, Yali Zhu, PhD, Yue-Zhong Wu, MAS, Brian Giacopelli, BS, Kevin Coombes, PhD, Christopher C Oakes, PhD, Lynne V. Abruzzo, MD PhD
Journal: Blood
Blood (2016) 128 (22): 1527.
https://doi.org/10.1182/blood.V128.22.1527.1527
Published: 2016
Journal Articles

Epigenetic Drug Treatment Globally Induces Cryptic Transcription Start Sites Encoded in Long Terminal Repeats

Michael Daskalakis, David Brocks, Christopher Schmidt, Daofeng Li, Jing Li, Hyo S. Jang, Bo Zhang, Daniel B Lipka, Johanna Schott, Holger Bierhoff, Yassen Assenov, Monika Helf, Alzbeta Ressnerova, Anders Lindroth, Simon Haas, Marieke A. G. Essers, Charles D. Imbusch, Benedikt Brors, Ina Oehme, Olaf Witt, Michael Lübbert, MD, Georg Stoecklin, Clarissa Gerhäuser, Christopher C Oakes, PhD, Ting Wang, Christoph Plass
Journal: Blood
Blood (2016) 128 (22): 3931.
https://doi.org/10.1182/blood.V128.22.3931.3931
Published: 2016
Journal Articles

Comparative Evaluation of Prognostic Factors That Assess the Natural History of Chronic Lymphocytic Leukemia

Brian Giacopelli, BS, Amy S. Ruppert, MAS, Yue-Zhong Wu, MAS, Laura Z. Rassenti, PhD, William G. Wierda, MD PhD, Kanti R Rai, MD, Neil E. Kay, MD, Jennifer R. Brown, Thomas J. Kipps, MD, PhD, John C. Byrd, MD, Christopher C Oakes, PhD
Journal: Blood
Blood (2016) 128 (22): 968.
https://doi.org/10.1182/blood.V128.22.968.968
Published: 2016
Journal Articles

Progressive Epigenetic Programming during B Cell Maturation Is Reflected in a Continuum of Epigenetic Disease Phenotypes in Chronic Lymphocytic Leukemia

Christopher C. Oakes, PhD, Marc Seifert, Yassen Assenov, Lei Gu, Martina Przekopowitz, Amy S. Ruppert, MAS, Qi Wang, Charles Imbusch, Andrius Serva, Sandra Koser, David Brocks, Daniel B Lipka, Olga Bogatyrova, Benedikt Brors, Dieter Weichenhan, Laura Z. Rassenti, PhD, Thomas J. Kipps, MD PhD, Daniel Mertens, PhD, Marc Zapatka, Peter Lichter, Hartmut Döhner, MD, Ralf Kueppers, Thorsten Zenz, Stephan Stilgenbauer, MD, John C Byrd, MD, Christoph Plass, PhD
Journal: Blood
Blood (2015) 126 (23): 2436.
https://doi.org/10.1182/blood.V126.23.2436.2436
Published: 2015
Journal Articles

IL-10 Production By CLL Cells Is Enhanced in the Anergic IGHV Mutated Subset and Associates with Reduced DNA Methylation of the IL-10 Locus

Samantha Drennan, PhD, Annalisa D'Avola, MSc, Yifang Gao, PhD, Eleni Chrysostomou, MSc, Andrew J Steele, PhD, Thorsten Zenz, MD, Christoph Plass, PhD, Peter W Johnson, MD, Anthony P Williams, PhD FRCPath, Graham Packham, PhD, Freda K Stevenson, DPhil, Christopher C. Oakes, PhD, Francesco Forconi, MD DM, PhD FRCPath
Journal: Blood
Blood (2015) 126 (23): 2917.
https://doi.org/10.1182/blood.V126.23.2917.2917
Published: 2015
Journal Articles

NFATc1 Is Transcriptionally Activated in Chronic Lymphocytic Leukemia (CLL) By Promotor DNA-Hypomethylation Which Correlates with in-Vitro Vulnerability to Calcineurin Inhibitors

Christine Wolf, Katharina Filarsky, Angela Garding, PhD, Rainer Claus, MD, Christopher C Oakes, PhD, Irina Idler, PhD, Christoph Plass, PhD, Peter Lichter, PhD, Hartmut Doehner, MD, Stephan Stilgenbauer, MD, Daniel Mertens, PhD
Journal: Blood
Blood (2014) 124 (21): 1941.
https://doi.org/10.1182/blood.V124.21.1941.1941
Published: 2014