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Binbin Chen
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Journal Articles

Phased Variant Enrichment for Enhanced Minimal Residual Disease Detection from Cell-Free DNA

David M. Kurtz, MD PhD, Joanne Soo, MD, Stefan Alig, MD, Lyron Co Ting Keh, Charles Macaulay, Michael C. Jin, BS, Florian Scherer, MD, Emily G. Hamilton, BS, Chih Long Liu, PhD, Binbin Chen, PhD, Alexander F. M. Craig, MPhil, Maximilian Diehn, MD PhD, Ash A. Alizadeh, MD PhD
Journal: Blood
Blood (2019) 134 (Supplement_1): 552.
https://doi.org/10.1182/blood-2019-131267
Published: 2019
Journal Articles

Maria-I: A Deep-Learning Approach for Accurate Prediction of MHC Class I Tumor Neoantigen Presentation

Karan R. Kathuria, Binbin Chen, PhD, Michael S. Khodadoust, MD PhD, Niclas Olsson, PhD, Mark M Davis, PhD, Joshua E Elias, PhD, Ronald Levy, MD, Russ B. Altman, MD PhD, Arash A. Alizadeh, MD PhD
Journal: Blood
Blood (2019) 134 (Supplement_1): 84.
https://doi.org/10.1182/blood-2019-129334
Published: 2019
Journal Articles

B-cell lymphomas present immunoglobulin neoantigens

Michael S. Khodadoust, Niclas Olsson, Binbin Chen, Brian Sworder, Tanaya Shree, Chih Long Liu, Lichao Zhang, Debra K. Czerwinski, Mark M. Davis, Ronald Levy, Joshua E. Elias, Ash A. Alizadeh
Journal: Blood
Blood (2019) 133 (8): 878–881.
https://doi.org/10.1182/blood-2018-06-845156
Published: 2019
Includes: Supplemental data
Journal Articles

Distinct Chromatin Accessibility Profiles of Lymphoma Subtypes Revealed By Targeted Cell Free DNA Profiling

Mahya Mehrmohamadi, PhD, Mohammad S Esfahani, PhD, Joanne Soo, BS, Florian Scherer, MD, Joseph G Schroers-Martin, MD, Binbin Chen, BS, David M. Kurtz, MDPhD, Emily Hamilton, BS, Chih Long Liu, PhD, Maximilian Diehn, MD PhD, Ash A. Alizadeh, MDPhD
Journal: Blood
Blood (2018) 132 (Supplement 1): 672.
https://doi.org/10.1182/blood-2018-99-119361
Published: 2018
Journal Articles

Maria: Accurate Prediction of MHC-II Peptide Presentation with Deep-Learning and Lymphoma Patient MHC-II Ligandome

Binbin Chen, BS, Michael Khodadoust, MD PhD, Niclas Olsson, PhD, Ethan Fast, BS, Lisa E Wagar, PhD, Chih Long Liu, PhD, Mark Davis, PhD, Ronald Levy, MD, Joshua E Elias, PhD, Russ B Altman, MD PhD, Arash A. Alizadeh, MD PhD
Journal: Blood
Blood (2017) 130 (Supplement 1): 1486.
https://doi.org/10.1182/blood.V130.Suppl_1.1486.1486
Published: 2017
Journal Articles

Antigen Presentation Profiling Reveals T-Cell Recognition of Lymphoma Immunoglobulin Neoantigens

Michael Khodadoust, MD PhD, Niclas Olsson, PhD, Lisa Wagar, PhD, Binbin Chen, Keith Rawson, Chih Long Liu, David Steiner, MD PhD, Samhita Rao, MS, Lichao Zhang, PhD, Henning Stehr, PhD, Aaron M Newman, PhD, Debra K Czerwinski, Victoria Carlton, PhD, Martin Moorhead, PhD, Malek Faham, MD PhD, Holbrook Kohrt, MD, Michael R Green, PhD, Mark M Davis, PhD, Ron Levy, MD, Joshua Elias, PhD, Ash A. Alizadeh, MD PhD
Journal: Blood
Blood (2016) 128 (22): 915.
https://doi.org/10.1182/blood.V128.22.915.915
Published: 2016