Figure 1.
Figure 1. Sanger sequencing detection limit and single-cell MYD88 PCR analysis. (A) MYD88 PCR was conducted to amplify both MYD88L265P and MYD88WT alleles. Amplified sequences were verified to encode either CCG or CTG corresponding to the mutant MYD88L265P and MYD88WT alleles, respectively. (B) The PCR amplicons were mixed in titrating proportions to determine the Sanger sequencing detection limit. The lowest detection limit of Sanger sequencing in detecting MYD88L265P and MYD88WT MYD88 alleles was ∼30%. (C) Single-cell MYD88 PCR was conducted on a clinical DLBCL sample with 15 single cells (1-15); 14 of 15 cells gave a PCR band of ∼200 bp. (D) Multiple sequence alignment of the excised and sequenced PCR amplicon showed a T → C point mutation in 5 representative cells from clinical samples but not in Pfeiffer cells (a germinal center B cell–like DLBCL exhibiting the MYD88WT allele). (E) Electropherogram showed clean and well-resolved sequencing peaks for MYD88L265P and MYD88WT. The black arrows throughout indicate the location of the point mutation. NTC, no template control; WT, wild type.

Sanger sequencing detection limit and single-cell MYD88 PCR analysis. (A) MYD88 PCR was conducted to amplify both MYD88L265P and MYD88WT alleles. Amplified sequences were verified to encode either CCG or CTG corresponding to the mutant MYD88L265P and MYD88WT alleles, respectively. (B) The PCR amplicons were mixed in titrating proportions to determine the Sanger sequencing detection limit. The lowest detection limit of Sanger sequencing in detecting MYD88L265P and MYD88WT MYD88 alleles was ∼30%. (C) Single-cell MYD88 PCR was conducted on a clinical DLBCL sample with 15 single cells (1-15); 14 of 15 cells gave a PCR band of ∼200 bp. (D) Multiple sequence alignment of the excised and sequenced PCR amplicon showed a T → C point mutation in 5 representative cells from clinical samples but not in Pfeiffer cells (a germinal center B cell–like DLBCL exhibiting the MYD88WT allele). (E) Electropherogram showed clean and well-resolved sequencing peaks for MYD88L265P and MYD88WT. The black arrows throughout indicate the location of the point mutation. NTC, no template control; WT, wild type.

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