Figure 3
Figure 3. Unsupervised analyses and classification results of candidate CEBPAdm cases with their GEP and their molecular characteristics. (A) Pairwise correlations between the 674 AML cases (supplemental Table 1). The cells in the visualization are colored by Pearson correlations values, depicting higher positive (red) or negative (blue) correlations, as indicated by the scale bar. CEBPAsm, CEBPAdm, CEBPAC-terminal mutation, CEBPAN-terminal mutation, CEBPAsilenced, together with inv(16), t(15;17), and t(8;21) cases are depicted on the diagonal with a red or blue colored bar. CEBPAC-terminal mutation and CEBPAN-terminal mutation indicates the presence of homozygous mutations. (B) Candidate CEBPAdm patients and the unambiguous CEBPAsm patients. The expression levels are defined by the 25-probe set signature. The colors of the hierarchical clustering are relative to the mean. (C) Computed posterior probabilities, indicating the prediction of a CEBPAdm case, given the 25 predictive probe set signature: P(CEBPAdm 25-probe sets). The ordering of patients is based on the classification probabilities. (D) True labels (molecular characteristics). Filled lanes indicate the mutation status in CEBPA (CEBPAdm or CEBPAsm), NPM1 (NPM1mutant), or FLT3 (TKD or ITD), open lanes represents no mutation in the particular patient, and a missing value is depicted in gray. *Germline CEBPAdm cases.

Unsupervised analyses and classification results of candidate CEBPAdm cases with their GEP and their molecular characteristics. (A) Pairwise correlations between the 674 AML cases (supplemental Table 1). The cells in the visualization are colored by Pearson correlations values, depicting higher positive (red) or negative (blue) correlations, as indicated by the scale bar. CEBPAsm, CEBPAdm, CEBPAC-terminal mutation, CEBPAN-terminal mutation, CEBPAsilenced, together with inv(16), t(15;17), and t(8;21) cases are depicted on the diagonal with a red or blue colored bar. CEBPAC-terminal mutation and CEBPAN-terminal mutation indicates the presence of homozygous mutations. (B) Candidate CEBPAdm patients and the unambiguous CEBPAsm patients. The expression levels are defined by the 25-probe set signature. The colors of the hierarchical clustering are relative to the mean. (C) Computed posterior probabilities, indicating the prediction of a CEBPAdm case, given the 25 predictive probe set signature: P(CEBPAdm 25-probe sets). The ordering of patients is based on the classification probabilities. (D) True labels (molecular characteristics). Filled lanes indicate the mutation status in CEBPA (CEBPAdm or CEBPAsm), NPM1 (NPM1mutant), or FLT3 (TKD or ITD), open lanes represents no mutation in the particular patient, and a missing value is depicted in gray. *Germline CEBPAdm cases.

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