Figure 2
Figure 2. Plots of transformed linkage statistics (−log10[P value]) after the removal of high-LD SNPs for chromosomes 2, 5, 6, 11, and 18. Transformed HLOD scores under the best dominant model are shown in black; under the best recessive model, in red; and transformed NPL values, in blue. The best recessive model for each of the 5 chromosomes was chromosomes 2, 6, and 18 (common recessive) and chromosomes 5 and 11 (rare recessive). The best dominant model for each of the 5 chromosomes was chromosomes 2, 6, and 11 (common dominant) and chromosomes 5 and 18 (rare dominant).

Plots of transformed linkage statistics (−log10[P value]) after the removal of high-LD SNPs for chromosomes 2, 5, 6, 11, and 18. Transformed HLOD scores under the best dominant model are shown in black; under the best recessive model, in red; and transformed NPL values, in blue. The best recessive model for each of the 5 chromosomes was chromosomes 2, 6, and 18 (common recessive) and chromosomes 5 and 11 (rare recessive). The best dominant model for each of the 5 chromosomes was chromosomes 2, 6, and 11 (common dominant) and chromosomes 5 and 18 (rare dominant).

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