Current GDC bioinformatics pipelines. High-level processes indicating the GDC analysis and resulting data products created from GDC hg38-aligned data, submitted SNP 6.0 array data, or submitted methylation array data. BAM, binary alignment map; FPKM, fragments per kilobase of transcript per million mapped reads; FPKM-UQ, FPKM-upper quartile; MAF, mutation annotation format; miRNA, microRNA; VCF, variant calling format.