Figure 1.
Figure 1. shRNA screens for genes uniquely required by AML cell lines for survival. (A) Schematic representation of data analysis workflow. One hundred ninety-seven genes with ≥2 significant shRNAs were selected, and 214 genes with significant ATARiS scores were selected. The 2 lists have 58 overlapping genes and 353 genes in total. (B) The 353 screen hits are enriched of genes highly expressed in CCLE AML cell lines based on GSEA.30 (C) Examples of screen hits that are frequently altered in AML or required by AML cells for survival compared with non-AML cancer cell lines. Lines indicate mean. FDR, false discovery rate; NES, normalized enrichment score.

shRNA screens for genes uniquely required by AML cell lines for survival. (A) Schematic representation of data analysis workflow. One hundred ninety-seven genes with ≥2 significant shRNAs were selected, and 214 genes with significant ATARiS scores were selected. The 2 lists have 58 overlapping genes and 353 genes in total. (B) The 353 screen hits are enriched of genes highly expressed in CCLE AML cell lines based on GSEA.30  (C) Examples of screen hits that are frequently altered in AML or required by AML cells for survival compared with non-AML cancer cell lines. Lines indicate mean. FDR, false discovery rate; NES, normalized enrichment score.

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