Figure 3
Figure 3. Integration of ChIP-Seq and expression data reveals transcriptional programs regulated by ERG in Tg leukemia. (A) Heat map depicting gene expression of ERG-bound genes in TgERG leukemia compared with the WT lin– controls. (B) GSEA using upregulated transcription factors (TFs) in Tg-ERG leukemia shows significant enrichment in human AML progenitors (LPC) compared with normal hematopoietic progenitors (HPC20). (C) Validation of Gata2 and Hey2 upregulation in TgERG leukemia compared with WT bone marrow, WT lin– bone marrow, and WT MEPs. Quantitative RT-PCR results normalized to β-actin are shown (mean ± SEM, n = 3 for WT, WT lin–, and WT MEPs; n = 5 for TgERG leukemia).

Integration of ChIP-Seq and expression data reveals transcriptional programs regulated by ERG in Tg leukemia. (A) Heat map depicting gene expression of ERG-bound genes in TgERG leukemia compared with the WT lin controls. (B) GSEA using upregulated transcription factors (TFs) in Tg-ERG leukemia shows significant enrichment in human AML progenitors (LPC) compared with normal hematopoietic progenitors (HPC20 ). (C) Validation of Gata2 and Hey2 upregulation in TgERG leukemia compared with WT bone marrow, WT lin bone marrow, and WT MEPs. Quantitative RT-PCR results normalized to β-actin are shown (mean ± SEM, n = 3 for WT, WT lin, and WT MEPs; n = 5 for TgERG leukemia).

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