Figure 3.
Figure 3. Gene expression profile of cultured EPCR+ population is enriched with HSC-related genes. (A) Scatter plot of global mRNA profiling showing upregulated (red) and downregulated (blue) genes in EPCR+ versus EPCRRest (EPCR– and EPCRlow) populations (selection criteria: P ≤ .01, mean expression ≥1 RPKM; ≥ 2-fold difference). (B) GSEA plot showing enrichment for HSC-related genes in the EPCR+ population. Gene expression profiles of uncultured purified human HSCs derived from CB and fetal liver (FL) from 2 independent data sets were used for the GSEA analysis. All comparisons were significant. (C) Venn diagram showing the number of common and distinct upregulated genes in the EPCR+ population in CD34+CD38low/–CD90+ FL cells and in CD34+CD38– (FL and CB) cells. mRNA (D) and protein (E) levels of known HSC surface markers in various CB cell populations. GPR56, G protein-coupled receptor 56; NES, normalized enrichment score.

Gene expression profile of cultured EPCR+population is enriched with HSC-related genes. (A) Scatter plot of global mRNA profiling showing upregulated (red) and downregulated (blue) genes in EPCR+ versus EPCRRest (EPCR and EPCRlow) populations (selection criteria: P ≤ .01, mean expression ≥1 RPKM; ≥ 2-fold difference). (B) GSEA plot showing enrichment for HSC-related genes in the EPCR+ population. Gene expression profiles of uncultured purified human HSCs derived from CB and fetal liver (FL) from 2 independent data sets were used for the GSEA analysis. All comparisons were significant. (C) Venn diagram showing the number of common and distinct upregulated genes in the EPCR+ population in CD34+CD38low/–CD90+ FL cells and in CD34+CD38 (FL and CB) cells. mRNA (D) and protein (E) levels of known HSC surface markers in various CB cell populations. GPR56, G protein-coupled receptor 56; NES, normalized enrichment score.

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