Figure 6
Figure 6. MCL SOX11-negative primary tumors lose B-cell identity and gain in a plasmablast gene signature. (A-B) GSEA analysis on preranked lists. (A) Using our customized gene sets described in “supplemental Materials and methods,” SOX11 upregulated and downregulated genes and primary MCL-SOX11+ tumors are enriched for SOX11-upregulated genes whereas primary MCL-SOX11− tumors are enriched in SOX11-downregulated genes. (B) MCL-SOX11+ tumors are enriched in B-cell vs plasmablast and PAX5 activated genes gene sets whereas MCL-SOX11− tumors are enriched in plasmablast signature and XBP1 target genes. NES and FDR are shown. Statistical significance is considered when FDR < 0.1. (C) Analysis of CD24 and surface IgM expression in CD19+ CD5+ cells (MCL-SOX11+) or CD19+ CD5− cells (MCL-SOX11−). Numbers inside the histograms indicate the percentage of positive cells above the isotype control. (D) Mean fluorescence intensity (MFI) of surface CD24 and IgM expression in primary MCL tumors.

MCL SOX11-negative primary tumors lose B-cell identity and gain in a plasmablast gene signature. (A-B) GSEA analysis on preranked lists. (A) Using our customized gene sets described in “supplemental Materials and methods,” SOX11 upregulated and downregulated genes and primary MCL-SOX11+ tumors are enriched for SOX11-upregulated genes whereas primary MCL-SOX11 tumors are enriched in SOX11-downregulated genes. (B) MCL-SOX11+ tumors are enriched in B-cell vs plasmablast and PAX5 activated genes gene sets whereas MCL-SOX11 tumors are enriched in plasmablast signature and XBP1 target genes. NES and FDR are shown. Statistical significance is considered when FDR < 0.1. (C) Analysis of CD24 and surface IgM expression in CD19+ CD5+ cells (MCL-SOX11+) or CD19+ CD5 cells (MCL-SOX11). Numbers inside the histograms indicate the percentage of positive cells above the isotype control. (D) Mean fluorescence intensity (MFI) of surface CD24 and IgM expression in primary MCL tumors.

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