Figure 1
Figure 1. Microarray analysis and validation. (A) Differential gene expression of cord blood CD34+ cells (n = 4) in response to SDF-1 (100 ng/mL) was analyzed by Affymetrix HG-U133 Plus 2.0 GeneChip software. Hierarchical analysis of the SDF-1–modulated genes involved in cell motility (left panel) and cell adhesion (right panel) were performed using the Euclidean distance metric. The color scale represents log2 normalized signal intensity. CTRL, control. (B) Differential expression of 18 SDF-1–induced genes was validated by qPCR in CD34+ cells derived from the same cord blood samples used in microarray experiments (n = 4) plus CD34+ cells from an independent cohort of cord blood (n = 4-6). Gene expression levels were calculated by the comparative CT method and are represented as the fold change of gene expression level in SDF-1–treated cells compared with control untreated cells. The red dashed line represents the 1.5-fold cutoff. Results are depicted as means ± SEM.

Microarray analysis and validation. (A) Differential gene expression of cord blood CD34+ cells (n = 4) in response to SDF-1 (100 ng/mL) was analyzed by Affymetrix HG-U133 Plus 2.0 GeneChip software. Hierarchical analysis of the SDF-1–modulated genes involved in cell motility (left panel) and cell adhesion (right panel) were performed using the Euclidean distance metric. The color scale represents log2 normalized signal intensity. CTRL, control. (B) Differential expression of 18 SDF-1–induced genes was validated by qPCR in CD34+ cells derived from the same cord blood samples used in microarray experiments (n = 4) plus CD34+ cells from an independent cohort of cord blood (n = 4-6). Gene expression levels were calculated by the comparative CT method and are represented as the fold change of gene expression level in SDF-1–treated cells compared with control untreated cells. The red dashed line represents the 1.5-fold cutoff. Results are depicted as means ± SEM.

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