Figure 3.
Figure 3. HTS of IGH in BL tumors reveals large families of closely related sequences. (A) Phylogenetic tree of all IGH sequences observed in a representative BL tumor sample. Unique IGH VDJ gene rearrangements are indicated by node color. The red arrow indicates the dominant unique sequence identified in the tumor. (B-G) Density plots of nucleotide edit distance (the number of nucleotide differences between a given unique sequence and the most frequent sequence in the tumor) for all sequences identified in all BL IGH samples (B), BL IGK/IGL samples (C), BL TRB samples (D), nonmalignant bone marrow and PBMC IGH control samples (E), bone marrow control IGK/IGL samples (F), and for CD8+ T-cell clones (G). (H) Clonal relatedness scores for each of the sample populations listed above (defined as the total number of distinct unique sequences with an edit distance <10 from the most frequent sequence, divided by the total number of unique sequences).

HTS of IGH in BL tumors reveals large families of closely related sequences. (A) Phylogenetic tree of all IGH sequences observed in a representative BL tumor sample. Unique IGH VDJ gene rearrangements are indicated by node color. The red arrow indicates the dominant unique sequence identified in the tumor. (B-G) Density plots of nucleotide edit distance (the number of nucleotide differences between a given unique sequence and the most frequent sequence in the tumor) for all sequences identified in all BL IGH samples (B), BL IGK/IGL samples (C), BL TRB samples (D), nonmalignant bone marrow and PBMC IGH control samples (E), bone marrow control IGK/IGL samples (F), and for CD8+ T-cell clones (G). (H) Clonal relatedness scores for each of the sample populations listed above (defined as the total number of distinct unique sequences with an edit distance <10 from the most frequent sequence, divided by the total number of unique sequences).

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