Figure 6.
Efficacy of positive hits from stepwise drug discovery approach in vivo. (A) Representative scheme of our stepwise drug discovery approach coupled with in vivo preclinical trials. Tumor cells from T-ALL PDXs were first screened with a library of 433 compounds in 384-well plate format. Positive hits were then validated in 96-well plate format with and without E4-ECs. The number of candidates was narrowed down (n = 29) after implementation of multiple experimental conditions and validations. Representative drugs not rescued by E4-ECs were then tested in vivo and proved to be effective in T-ALL PDX mice. (B) Kaplan-Meier plot depicting overall survival of all the mice (n = 111) treated with vehicle vs different therapeutic regimens across 11 different PDX models. P value was calculated using a log-rank test. (C) Bar plot showing the fold change in the percentage of T-ALL cells in the blood of RO2 and RO6 PDX mice treated with ruxolitinib, bortezomib, tofacitinib, and combinations compared with controls. P values were calculated by t test. ∗P < .05; ∗∗P < .01. (D) Bar plot showing the fold change in the spleen volume (measured by MRI) of RO2 and RO6 mice treated with ruxolitinib, bortezomib, tofacitinib, and combinations compared with controls. P values were calculated by t test. ∗P < .05; ∗∗P < .01. (E) Kaplan-Meier plot depicting overall survival of RO6 mice treated with vehicle, tofacitinib, ruxolitinib, or combination. P value was calculated using a log-rank test. (F) Line-dot plot showing changes in spleen volume (measured by MRI) of 3053 PDX mice treated with irinotecan (20 mg/kg per day) compared with controls in a timeframe of 40 days. P value was calculated by t test. ∗∗∗∗P < .0001. (G) Line-dot plot showing changes in percentage of T-ALL cells in blood of 3053 and 3119 PDX mice treated with irinotecan compared with controls in a timeframe of 80 days. Three of the 12 irinotecan-treated mice relapsed and died of leukemia. P value was calculated by t test. ∗∗∗∗P < .0001. (H) Kaplan-Meier plot depicting overall survival of 3053 and 3119 PDX mice treated with vehicle or irinotecan. Nine of the 12 irinotecan-treated mice died without leukemia. P value was calculated using a log-rank test. (I) Kaplan-Meier plot depicting overall survival of 8 different T-ALL PDX models (6467, 14741, 7072, 7155, 13002, 13356, 10512, and 5384) treated with vehicle or HDAC inhibitor panobinostat (n = 2 mice per arm, n = 32 mice total) (5 mg/kg per day). Mice belonging to 3 of the 8 models (5384, 7155, and 6467) died without leukemia. P value was calculated using a log-rank test. (J) Bar plot depicting the circulating T-ALL cells (difference between day 30 and day 0; day 0: first T-ALL detection in the blood) in 8 PDX models treated with vehicle or panobinostat. A single partially refractory model was identified (1 of 8, 7072 PDX T-ALL). P value was calculated by t test. ∗∗P < .001. (K) Bar plots depicting the percentage of circulating T-ALL cells in 4 PDX models (10512, 6467, 13002, and 13356) treated with vehicle, daunorubicin (1.2 mg/kg for 3 days/week), linsitinib (50 mg/kg per day), or combination (n = 2 mice per arm, n = 32 mice total). Mice treated with daunorubicin plus linsitinib displayed delayed leukemia progression compared with the other arms. P value was calculated by t test. ∗P < .05. (L) Kaplan-Meier plot depicting overall survival of 10512, 6467, 13002, and 13356 T-ALL PDX models treated with vehicle, daunorubicin, linsitinib, or combination. Mice treated with daunorubicin plus linsitinib survived until 3 months from enrollment. P value was calculated using a log-rank test.

Efficacy of positive hits from stepwise drug discovery approach in vivo. (A) Representative scheme of our stepwise drug discovery approach coupled with in vivo preclinical trials. Tumor cells from T-ALL PDXs were first screened with a library of 433 compounds in 384-well plate format. Positive hits were then validated in 96-well plate format with and without E4-ECs. The number of candidates was narrowed down (n = 29) after implementation of multiple experimental conditions and validations. Representative drugs not rescued by E4-ECs were then tested in vivo and proved to be effective in T-ALL PDX mice. (B) Kaplan-Meier plot depicting overall survival of all the mice (n = 111) treated with vehicle vs different therapeutic regimens across 11 different PDX models. P value was calculated using a log-rank test. (C) Bar plot showing the fold change in the percentage of T-ALL cells in the blood of RO2 and RO6 PDX mice treated with ruxolitinib, bortezomib, tofacitinib, and combinations compared with controls. P values were calculated by t test. ∗P < .05; ∗∗P < .01. (D) Bar plot showing the fold change in the spleen volume (measured by MRI) of RO2 and RO6 mice treated with ruxolitinib, bortezomib, tofacitinib, and combinations compared with controls. P values were calculated by t test. ∗P < .05; ∗∗P < .01. (E) Kaplan-Meier plot depicting overall survival of RO6 mice treated with vehicle, tofacitinib, ruxolitinib, or combination. P value was calculated using a log-rank test. (F) Line-dot plot showing changes in spleen volume (measured by MRI) of 3053 PDX mice treated with irinotecan (20 mg/kg per day) compared with controls in a timeframe of 40 days. P value was calculated by t test. ∗∗∗∗P < .0001. (G) Line-dot plot showing changes in percentage of T-ALL cells in blood of 3053 and 3119 PDX mice treated with irinotecan compared with controls in a timeframe of 80 days. Three of the 12 irinotecan-treated mice relapsed and died of leukemia. P value was calculated by t test. ∗∗∗∗P < .0001. (H) Kaplan-Meier plot depicting overall survival of 3053 and 3119 PDX mice treated with vehicle or irinotecan. Nine of the 12 irinotecan-treated mice died without leukemia. P value was calculated using a log-rank test. (I) Kaplan-Meier plot depicting overall survival of 8 different T-ALL PDX models (6467, 14741, 7072, 7155, 13002, 13356, 10512, and 5384) treated with vehicle or HDAC inhibitor panobinostat (n = 2 mice per arm, n = 32 mice total) (5 mg/kg per day). Mice belonging to 3 of the 8 models (5384, 7155, and 6467) died without leukemia. P value was calculated using a log-rank test. (J) Bar plot depicting the circulating T-ALL cells (difference between day 30 and day 0; day 0: first T-ALL detection in the blood) in 8 PDX models treated with vehicle or panobinostat. A single partially refractory model was identified (1 of 8, 7072 PDX T-ALL). P value was calculated by t test. ∗∗P < .001. (K) Bar plots depicting the percentage of circulating T-ALL cells in 4 PDX models (10512, 6467, 13002, and 13356) treated with vehicle, daunorubicin (1.2 mg/kg for 3 days/week), linsitinib (50 mg/kg per day), or combination (n = 2 mice per arm, n = 32 mice total). Mice treated with daunorubicin plus linsitinib displayed delayed leukemia progression compared with the other arms. P value was calculated by t test. ∗P < .05. (L) Kaplan-Meier plot depicting overall survival of 10512, 6467, 13002, and 13356 T-ALL PDX models treated with vehicle, daunorubicin, linsitinib, or combination. Mice treated with daunorubicin plus linsitinib survived until 3 months from enrollment. P value was calculated using a log-rank test.

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