Figure 1.
Use of CRISPR/Cas9 screening to study intrinsic tumor resistance mechanisms to CAR T cells. (A) Schematic showing the CRISPR/Cas9 screening process. (B) The 10 genes with the most significant sgRNA enrichment. (C) Log2 fold change of normalized counts of each sgRNA targeting CD58, CD81, ICAM1, or ITGA4 in the screening. (D) Efficacy of CD58, CD81, ICAM1, or ITGA4 KO in Nalm6 cells. (E-H) GFP-labeled indicated KO cells and mCherry-labeled WT cells were mixed at a ∼1:1 ratio and cocultured with control T or CAR T cells. The KO (GFP+)/WT (mCherry+) ratio was calculated over time. CD58KO/WT Nalm6 ratio (E), CD81KO/WT Nalm6 ratio (F), ICAM1KO/WT Nalm6 raito (G), and ITGA4KO/WT Nalm6 ratio (H) in growth competition assay. KO cell lines referred to sgRNA-1 targeting the indicated genes in panels E-H. A mixture of cells was cocultured with control T or CD19 CAR T cells at a 1:20 E:T ratio (n = 3). Statistical comparisons were performed using a 2-way ANOVA test with multiple comparisons. The values are shown as the means plus or minus SD. ∗P < .05; ∗∗P < .01; ∗∗∗ P < .001. ns, not significant (P > .05); RRA, Robust Rank Aggregation.

Use of CRISPR/Cas9 screening to study intrinsic tumor resistance mechanisms to CAR T cells. (A) Schematic showing the CRISPR/Cas9 screening process. (B) The 10 genes with the most significant sgRNA enrichment. (C) Log2 fold change of normalized counts of each sgRNA targeting CD58, CD81, ICAM1, or ITGA4 in the screening. (D) Efficacy of CD58, CD81, ICAM1, or ITGA4 KO in Nalm6 cells. (E-H) GFP-labeled indicated KO cells and mCherry-labeled WT cells were mixed at a ∼1:1 ratio and cocultured with control T or CAR T cells. The KO (GFP+)/WT (mCherry+) ratio was calculated over time. CD58KO/WT Nalm6 ratio (E), CD81KO/WT Nalm6 ratio (F), ICAM1KO/WT Nalm6 raito (G), and ITGA4KO/WT Nalm6 ratio (H) in growth competition assay. KO cell lines referred to sgRNA-1 targeting the indicated genes in panels E-H. A mixture of cells was cocultured with control T or CD19 CAR T cells at a 1:20 E:T ratio (n = 3). Statistical comparisons were performed using a 2-way ANOVA test with multiple comparisons. The values are shown as the means plus or minus SD. ∗P < .05; ∗∗P < .01; ∗∗∗ P < .001. ns, not significant (P > .05); RRA, Robust Rank Aggregation.

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