Figure 2.
NfκB dynamics change throughout the hematopoietic hierarchy. (A) Main NfκB response dynamics type frequencies in different cell types (manual classification). (B-E) Cell type–specific signaling dynamics. (B) Single-cell heat stripes (vertical) of all measured cells and conditions. Brightness represents nuclear p65 signal intensity (n = 2721 cells: 166 HSC, 167 MPP1, 93 MPP2, 340 MPP3, 210 PreGM, 680 GMP, 329 Mas, 204 PreMegE, and 290 MkP; N = 3 biological replicates). The first 6 hours are shown (12 hours in supplemental Figure 2H). (C) Frequencies of main response types per cell type (manual classification). Mean ± standard deviation (3 independent replicates). P values in supplemental Figure 2G. Colors as in (A). (D) UMAP representation based on extracted signaling dynamics features. UMAP shape as in Figure 1D. Only TNFα-stimulated cells are shown. Green dots = cell type as indicated in (B). (E-F) Three cell type–specific signaling dynamics feature scores across cell types (E) and on the signaling dynamics UMAP representation (F). UMAP shape as in Figure 1E. See also supplemental Figure 2.

NfκB dynamics change throughout the hematopoietic hierarchy. (A) Main NfκB response dynamics type frequencies in different cell types (manual classification). (B-E) Cell type–specific signaling dynamics. (B) Single-cell heat stripes (vertical) of all measured cells and conditions. Brightness represents nuclear p65 signal intensity (n = 2721 cells: 166 HSC, 167 MPP1, 93 MPP2, 340 MPP3, 210 PreGM, 680 GMP, 329 Mas, 204 PreMegE, and 290 MkP; N = 3 biological replicates). The first 6 hours are shown (12 hours in supplemental Figure 2H). (C) Frequencies of main response types per cell type (manual classification). Mean ± standard deviation (3 independent replicates). P values in supplemental Figure 2G. Colors as in (A). (D) UMAP representation based on extracted signaling dynamics features. UMAP shape as in Figure 1D. Only TNFα-stimulated cells are shown. Green dots = cell type as indicated in (B). (E-F) Three cell type–specific signaling dynamics feature scores across cell types (E) and on the signaling dynamics UMAP representation (F). UMAP shape as in Figure 1E. See also supplemental Figure 2.

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