Figure 1.
PIM2 expression and regulation during normal B-cell differentiation. (A) Using a 2-step cell culture process, VPD-labeled naive B cells (NBCs) were differentiated into the cell populations P1, P2, and P3. P2 cells were subdivided into P2/CD23+ and P2/CD23– subsets. The PB P1 population arose from the P2/CD23– subset. (B) Left: PIM2 RNA-seq results on D4 or day 5 (D5) in the various cell populations. Data are presented as the mean ± SD, n = 3. Right: PIM2 mRNA expression in the various cell populations on D6. mRNA data are presented as the median (range); n = 6. Bottom, PIM2 protein expression in all cell populations, from day 0 (D0) to D6. (C) A single-cell quantitative RT-PCR heat map of the expression of 31 genes in P2/CD23– vs P2/CD23+ cell subsets; the red arrow indicates PIM2 mRNA expression. (D) PIM2 mRNA expression (top) and protein expression (bottom) in different tonsil-derived B-cell populations. mRNA data are presented as the median (range), n = 7. (E) The Integrative Genomic Viewer genome browser window, showing several features around the PIM2 locus. Colored tracks at the top are our RNA-seq and ATAC-seq data.5 ATAC-seq showed that the open regions included the PIM2 promoter and an upstream enhancer that physically interact together. ATAC-seq regions close to PIM2 comprise transcription factor–binding sites for relevant factors such as STAT3, according to ENCODE data, and also BACH2, including one we have identified by chromatin immunoprecipitation.17 5hmC marks are identified in ATAC-seq regions and the body of the PIM2 sequence in PBs.4 Details are provided in supplemental Figure 2A. (F) Levels of BACH2 and PIM2 mRNA expression (left) and protein expression (right) in D4lo cells after transfection with siBACH2 on day 2 (D2). mRNA data are presented as the mean ± SD, n = 4. (G) On D5, PBs were sorted, starved, and then stimulated with the indicated cytokines. Left: PIM2 mRNA expression after 4 hours (pink) and 16 hours (red). For each time point, the results were normalized against the nonstimulated condition (set arbitrarily to 1 [in gray]). mRNA data are presented as the mean ± SD, n = 5. Right: PIM2, pSTAT3 and pSTAT5 protein expression after 16 hours. (H) On D5, PBs were sorted, starved, and then treated with increasing doses of a STAT3 inhibitor (Stat3i) 1 hour before the addition of IL-10. PIM2 mRNA expression (left) and protein expression (right) were assessed 4 hours after the addition of IL-10. mRNA data are presented as the mean ± SD, n = 5. (I) Regulation of PIM2 expression during B-cell differentiation. At the start of B-cell differentiation and despite the open chromatin on the promoter and on other regulatory regions, PIM2 expression is constrained by BACH2. BACH2 expression then declines throughout the differentiation process, whereas T follicular helper–driven molecules stimulate STAT3 signaling. Both events promote the burst in PIM2 expression in cells committed to differentiation into PBs. Statistical significance was evaluated by using the Mann-Whitney U test (panels C, F, G, and H) or the Kruskal-Wallis test (panel H). *P < .05, **P < .01, ***P < .001. CpG, cytosine guanine dinucleotide; GC, germinal center; IgM, immunoglobulin M; MBC, memory B cell; ns, not significant; siCTL, small interference (si) RNA control (CTL); TFs, transcription factors; VPD, violet cell proliferation dilution. Further details are presented in supplemental Figure 1.

PIM2 expression and regulation during normal B-cell differentiation. (A) Using a 2-step cell culture process, VPD-labeled naive B cells (NBCs) were differentiated into the cell populations P1, P2, and P3. P2 cells were subdivided into P2/CD23+ and P2/CD23 subsets. The PB P1 population arose from the P2/CD23 subset. (B) Left: PIM2 RNA-seq results on D4 or day 5 (D5) in the various cell populations. Data are presented as the mean ± SD, n = 3. Right: PIM2 mRNA expression in the various cell populations on D6. mRNA data are presented as the median (range); n = 6. Bottom, PIM2 protein expression in all cell populations, from day 0 (D0) to D6. (C) A single-cell quantitative RT-PCR heat map of the expression of 31 genes in P2/CD23 vs P2/CD23+ cell subsets; the red arrow indicates PIM2 mRNA expression. (D) PIM2 mRNA expression (top) and protein expression (bottom) in different tonsil-derived B-cell populations. mRNA data are presented as the median (range), n = 7. (E) The Integrative Genomic Viewer genome browser window, showing several features around the PIM2 locus. Colored tracks at the top are our RNA-seq and ATAC-seq data.5 ATAC-seq showed that the open regions included the PIM2 promoter and an upstream enhancer that physically interact together. ATAC-seq regions close to PIM2 comprise transcription factor–binding sites for relevant factors such as STAT3, according to ENCODE data, and also BACH2, including one we have identified by chromatin immunoprecipitation.17 5hmC marks are identified in ATAC-seq regions and the body of the PIM2 sequence in PBs.4 Details are provided in supplemental Figure 2A. (F) Levels of BACH2 and PIM2 mRNA expression (left) and protein expression (right) in D4lo cells after transfection with siBACH2 on day 2 (D2). mRNA data are presented as the mean ± SD, n = 4. (G) On D5, PBs were sorted, starved, and then stimulated with the indicated cytokines. Left: PIM2 mRNA expression after 4 hours (pink) and 16 hours (red). For each time point, the results were normalized against the nonstimulated condition (set arbitrarily to 1 [in gray]). mRNA data are presented as the mean ± SD, n = 5. Right: PIM2, pSTAT3 and pSTAT5 protein expression after 16 hours. (H) On D5, PBs were sorted, starved, and then treated with increasing doses of a STAT3 inhibitor (Stat3i) 1 hour before the addition of IL-10. PIM2 mRNA expression (left) and protein expression (right) were assessed 4 hours after the addition of IL-10. mRNA data are presented as the mean ± SD, n = 5. (I) Regulation of PIM2 expression during B-cell differentiation. At the start of B-cell differentiation and despite the open chromatin on the promoter and on other regulatory regions, PIM2 expression is constrained by BACH2. BACH2 expression then declines throughout the differentiation process, whereas T follicular helper–driven molecules stimulate STAT3 signaling. Both events promote the burst in PIM2 expression in cells committed to differentiation into PBs. Statistical significance was evaluated by using the Mann-Whitney U test (panels C, F, G, and H) or the Kruskal-Wallis test (panel H). *P < .05, **P < .01, ***P < .001. CpG, cytosine guanine dinucleotide; GC, germinal center; IgM, immunoglobulin M; MBC, memory B cell; ns, not significant; siCTL, small interference (si) RNA control (CTL); TFs, transcription factors; VPD, violet cell proliferation dilution. Further details are presented in supplemental Figure 1.

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