Figure 1.
The biological basis, framework, and in vitro tool for the multiscale in silico model of SIPA. (A) Atherosclerosis creates a stenosis with wall shear rate to above 10 000 s−1, leading to an acute arterial thrombus if the plaque cap ruptures. (B) At the exposed collagen surface, SIPA stems from nonactivated platelets and VWF. We virtually construct SIPA in a computational model including immobilized VWF dimers as blue beads on the surface, soluble VWF depicted as yellow strings, and GPIb-A1 bonds as red beads. (C) Framework of the multiscale in silico method.26 VWFs and platelets are modeled in silico to match their biological counterparts based on in vitro measurements.14,16 The dynamics of VWF strands and platelets suspended in the blood subjected to high shear rates are resolved through the coupling among lattice-Boltzmann method, Langevin-dynamics, and rigid body dynamics with fluid-structure interactions (FSI). Platelet and VWF binding kinetics are incorporated to the model, where the kinetic rates can be measured through single-molecular measurements such as biomembrane force probe,50,51 optical tweezers,20,21 atomic force microscopy,52 etc. (D) A low-variability, high-throughput thrombosis-on-a-chip platform12 is used for the validation of the in silico results. Panels C and D partially adopt figures from previous publications14,16,32 with permission.

The biological basis, framework, and in vitro tool for the multiscale in silico model of SIPA. (A) Atherosclerosis creates a stenosis with wall shear rate to above 10 000 s−1, leading to an acute arterial thrombus if the plaque cap ruptures. (B) At the exposed collagen surface, SIPA stems from nonactivated platelets and VWF. We virtually construct SIPA in a computational model including immobilized VWF dimers as blue beads on the surface, soluble VWF depicted as yellow strings, and GPIb-A1 bonds as red beads. (C) Framework of the multiscale in silico method.26  VWFs and platelets are modeled in silico to match their biological counterparts based on in vitro measurements.14,16  The dynamics of VWF strands and platelets suspended in the blood subjected to high shear rates are resolved through the coupling among lattice-Boltzmann method, Langevin-dynamics, and rigid body dynamics with fluid-structure interactions (FSI). Platelet and VWF binding kinetics are incorporated to the model, where the kinetic rates can be measured through single-molecular measurements such as biomembrane force probe,50,51  optical tweezers,20,21  atomic force microscopy,52  etc. (D) A low-variability, high-throughput thrombosis-on-a-chip platform12  is used for the validation of the in silico results. Panels C and D partially adopt figures from previous publications14,16,32  with permission.

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