Figure 2.
scATAC-seq reveals epigenetic changes associated with decreased myelomonocytic priming in gata2b mutants. (A) Uniform manifold approximation and projection (UMAP) of marrow cells in WT (n = 2), gata2bhet (n = 2), and gata2bko (n = 3). 10× Genomics scATAC-seq data are shown. BcellProg/Prec, B-cell progenitors and precursors; VE, vascular endothelium. (B) Quantification of hematopoietic cell types from scATAC-seq in WT and gata2bko zebrafish. *P < .05, Fisher’s exact test. (C) Differential TF motif score analysis between WT and gata2bko (KO) samples within HSPC-MPP population. (D) Feature plots of WT and gata2bko samples for NFIC motif score within individual cells in the HSPC-MPP population. (E) Violin plot of NFIC TF motif score in WT and gata2bko HSPC-MPPs. *P = .0014, 2-tailed Student t test. (F) Differential TF motif score analysis between WT and gata2bko (KO) samples within myeloid progenitors. (G) Feature plots of WT and gata2bko samples for SPI1 motif score within individual cells in the myeloid progenitor and granulocyte populations. (H) Violin plot of SPI1 TF motif score in WT and gata2bko myeloid progenitors. *P = 1.31 × 10−12, 2-tailed Student t test.

scATAC-seq reveals epigenetic changes associated with decreased myelomonocytic priming in gata2b mutants. (A) Uniform manifold approximation and projection (UMAP) of marrow cells in WT (n = 2), gata2bhet (n = 2), and gata2bko (n = 3). 10× Genomics scATAC-seq data are shown. BcellProg/Prec, B-cell progenitors and precursors; VE, vascular endothelium. (B) Quantification of hematopoietic cell types from scATAC-seq in WT and gata2bko zebrafish. *P < .05, Fisher’s exact test. (C) Differential TF motif score analysis between WT and gata2bko (KO) samples within HSPC-MPP population. (D) Feature plots of WT and gata2bko samples for NFIC motif score within individual cells in the HSPC-MPP population. (E) Violin plot of NFIC TF motif score in WT and gata2bko HSPC-MPPs. *P = .0014, 2-tailed Student t test. (F) Differential TF motif score analysis between WT and gata2bko (KO) samples within myeloid progenitors. (G) Feature plots of WT and gata2bko samples for SPI1 motif score within individual cells in the myeloid progenitor and granulocyte populations. (H) Violin plot of SPI1 TF motif score in WT and gata2bko myeloid progenitors. *P = 1.31 × 10−12, 2-tailed Student t test.

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