The role of MYC and BCL2 SVs in deregulation of mRNA and protein expression. (A) Association of MYC SVs with MYC mRNA and protein expression. (B) Association of BCL2 SVs with BCL2 mRNA and protein expression. The violin plots on the left show the association of mRNA expression levels with each SV. Error bars show the mean and 95% confidence intervals (CIs). On the right, the proportions of tumors that are positive (POS) or negative (NEG) according to IHC are shown along with forest plots indicating the association of each SV with IHC positivity (odds ratios with 95% CIs). All comparisons were made in reference to the normal group.