Minimal common regions found in MCL
Chromosome . | Gain or loss . | Upper flanking clone . | Lower flanking clone . | Mb region . | Chromosome region . | Incidence, % . |
---|---|---|---|---|---|---|
1 | Loss | RP11-246o4 | RP11-89b24 | 82,16-94,06 | 1p22.1-31.1 | 50 |
3 | Gain | RP11-89e20 | RP11-79m2 | 111,56-124,32 | 3q13.13-21.1 | 36 |
3 | Gain | RP11-89f24 | RP11-24116 | 158,78-170,33 | 3q25.32-26.2 | 50 |
4 | Gain | RP11-90d3 | RP11-90f11 | 43,04-47,61 | 4p12-13 | 57 |
6 | Loss | RP11-54p6 | RP11-81h13 | 133,52-167,42 | 6q23.2-27 | 36 |
8 | Gain | RP11-93j13 | RP11-90g19 | 77,53-90,20 | 8q21.11-21.3 | 36 |
8 | Gain | RP11-79o20 | RP11-21j16 | 109,25-117,80 | 8q23.1-23.3 | 36 |
10 | Loss | RP11-255d5 | RP11-5m6 | 123,71-127,89 | 10q26.13-26.2 | 36 |
11 | Loss | RP11-262j9 | RP11-279m1 | 110,51-114,30 | 11q22.3-23.3 | 57 |
13 | Loss | RP11-90m5 | RP11-487o12 | 27,75-46,16 | 13q12.3-14.31 | 43 |
13 | Loss | RP11-100a3 | RP11-29b2 | 93,16-104,06 | 13q31.3-33.2 | 43 |
20 | Loss | RP11-103h2 | RP11-238i2 | 8,74-14,42 | 20p12.1-12.3 | 43 |
20 | Loss | RP11-93119 | RP11-169a6 | 38,89-45,58 | 20q12-13.12 | 43 |
22 | Loss | RP11-91k24 | RP11-5i24 | 24,95-33,34 | 22q12.1-12.3 | 50 |
22 | Loss | RP11-1064g15 | RP11-629g24 | 45,82-46,90 | 22q13.31-13.32 | 50 |
Chromosome . | Gain or loss . | Upper flanking clone . | Lower flanking clone . | Mb region . | Chromosome region . | Incidence, % . |
---|---|---|---|---|---|---|
1 | Loss | RP11-246o4 | RP11-89b24 | 82,16-94,06 | 1p22.1-31.1 | 50 |
3 | Gain | RP11-89e20 | RP11-79m2 | 111,56-124,32 | 3q13.13-21.1 | 36 |
3 | Gain | RP11-89f24 | RP11-24116 | 158,78-170,33 | 3q25.32-26.2 | 50 |
4 | Gain | RP11-90d3 | RP11-90f11 | 43,04-47,61 | 4p12-13 | 57 |
6 | Loss | RP11-54p6 | RP11-81h13 | 133,52-167,42 | 6q23.2-27 | 36 |
8 | Gain | RP11-93j13 | RP11-90g19 | 77,53-90,20 | 8q21.11-21.3 | 36 |
8 | Gain | RP11-79o20 | RP11-21j16 | 109,25-117,80 | 8q23.1-23.3 | 36 |
10 | Loss | RP11-255d5 | RP11-5m6 | 123,71-127,89 | 10q26.13-26.2 | 36 |
11 | Loss | RP11-262j9 | RP11-279m1 | 110,51-114,30 | 11q22.3-23.3 | 57 |
13 | Loss | RP11-90m5 | RP11-487o12 | 27,75-46,16 | 13q12.3-14.31 | 43 |
13 | Loss | RP11-100a3 | RP11-29b2 | 93,16-104,06 | 13q31.3-33.2 | 43 |
20 | Loss | RP11-103h2 | RP11-238i2 | 8,74-14,42 | 20p12.1-12.3 | 43 |
20 | Loss | RP11-93119 | RP11-169a6 | 38,89-45,58 | 20q12-13.12 | 43 |
22 | Loss | RP11-91k24 | RP11-5i24 | 24,95-33,34 | 22q12.1-12.3 | 50 |
22 | Loss | RP11-1064g15 | RP11-629g24 | 45,82-46,90 | 22q13.31-13.32 | 50 |
Mb positions and chromosome bands of the clones were determined with the USSC genome browser (April 2003 freeze). Minimal common regions were determined by identifying the smallest region of overlap in the consecutive areas of the different cases.