Primers used for amplification and sequencing of the VKORC1 gene, fragment size, and polymerase chain reaction (PCR) conditions
Primer . | Position . | Sequence . | Amplicon size . | Annealing temperature . |
---|---|---|---|---|
VKORC1 5′ UTR FW | (-)718 to (-)699 | TGATCCGCTGGTCTCTAGGT | 786 bp | 59°C |
VKORC1 5′ UTR REV | 68-49 | GAGAGCACTAAGCCCGTCAG | ||
VKORC1 EX1 FW | (-)49 to (-)31 | CTCCGTGGCTGGTTTTCTC | 303 bp | 57°C |
VKORC1 EX1 REV | 254-235 | CCGATCCCAGACTCCAGAAT | ||
VKORC1 EX2 FW | 1120-1139 | TGACATGGAATCCTGACGTG | 361 bp | 57°C |
VKORC1 EX2 REV | 1480-1463 | GAGCTGACCAAGGGGGAT | ||
VKORC1 EX3 FW | 3348-3365 | AGTGCCTGAAGCCCACAC | 326 bp | 57°C |
VKORC1 EX3 REV | 3673-3654 | ACCCAGATATGCCCCCTTAG | ||
VKORC1 3′ UTR FW | 3534-3553 | AGCCTGATGTGGCTCAGTTT | 467 bp | 58°C |
VKORC1 3′ UTR REV | 4000-3981 | ATAACCACCCTTAAACGCAG |
Primer . | Position . | Sequence . | Amplicon size . | Annealing temperature . |
---|---|---|---|---|
VKORC1 5′ UTR FW | (-)718 to (-)699 | TGATCCGCTGGTCTCTAGGT | 786 bp | 59°C |
VKORC1 5′ UTR REV | 68-49 | GAGAGCACTAAGCCCGTCAG | ||
VKORC1 EX1 FW | (-)49 to (-)31 | CTCCGTGGCTGGTTTTCTC | 303 bp | 57°C |
VKORC1 EX1 REV | 254-235 | CCGATCCCAGACTCCAGAAT | ||
VKORC1 EX2 FW | 1120-1139 | TGACATGGAATCCTGACGTG | 361 bp | 57°C |
VKORC1 EX2 REV | 1480-1463 | GAGCTGACCAAGGGGGAT | ||
VKORC1 EX3 FW | 3348-3365 | AGTGCCTGAAGCCCACAC | 326 bp | 57°C |
VKORC1 EX3 REV | 3673-3654 | ACCCAGATATGCCCCCTTAG | ||
VKORC1 3′ UTR FW | 3534-3553 | AGCCTGATGTGGCTCAGTTT | 467 bp | 58°C |
VKORC1 3′ UTR REV | 4000-3981 | ATAACCACCCTTAAACGCAG |
Oligonucleotides are numbered according to the AY587020 sequence, the A of the ATG initiation codon is denoted as the nucleotide +1.