Table 1.

Primers used for amplification and sequencing of the VKORC1 gene, fragment size, and polymerase chain reaction (PCR) conditions


Primer

Position

Sequence

Amplicon size

Annealing temperature
VKORC1 5′ UTR FW   (-)718 to (-)699   TGATCCGCTGGTCTCTAGGT   786 bp   59°C  
VKORC1 5′ UTR REV   68-49   GAGAGCACTAAGCCCGTCAG    
VKORC1 EX1 FW   (-)49 to (-)31   CTCCGTGGCTGGTTTTCTC   303 bp   57°C  
VKORC1 EX1 REV   254-235   CCGATCCCAGACTCCAGAAT    
VKORC1 EX2 FW   1120-1139   TGACATGGAATCCTGACGTG   361 bp   57°C  
VKORC1 EX2 REV   1480-1463   GAGCTGACCAAGGGGGAT    
VKORC1 EX3 FW   3348-3365   AGTGCCTGAAGCCCACAC   326 bp   57°C  
VKORC1 EX3 REV   3673-3654   ACCCAGATATGCCCCCTTAG    
VKORC1 3′ UTR FW   3534-3553   AGCCTGATGTGGCTCAGTTT   467 bp   58°C  
VKORC1 3′ UTR REV
 
4000-3981
 
ATAACCACCCTTAAACGCAG
 

 

 

Primer

Position

Sequence

Amplicon size

Annealing temperature
VKORC1 5′ UTR FW   (-)718 to (-)699   TGATCCGCTGGTCTCTAGGT   786 bp   59°C  
VKORC1 5′ UTR REV   68-49   GAGAGCACTAAGCCCGTCAG    
VKORC1 EX1 FW   (-)49 to (-)31   CTCCGTGGCTGGTTTTCTC   303 bp   57°C  
VKORC1 EX1 REV   254-235   CCGATCCCAGACTCCAGAAT    
VKORC1 EX2 FW   1120-1139   TGACATGGAATCCTGACGTG   361 bp   57°C  
VKORC1 EX2 REV   1480-1463   GAGCTGACCAAGGGGGAT    
VKORC1 EX3 FW   3348-3365   AGTGCCTGAAGCCCACAC   326 bp   57°C  
VKORC1 EX3 REV   3673-3654   ACCCAGATATGCCCCCTTAG    
VKORC1 3′ UTR FW   3534-3553   AGCCTGATGTGGCTCAGTTT   467 bp   58°C  
VKORC1 3′ UTR REV
 
4000-3981
 
ATAACCACCCTTAAACGCAG
 

 

 

Oligonucleotides are numbered according to the AY587020 sequence, the A of the ATG initiation codon is denoted as the nucleotide +1.

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