Table 3.

Selected genes and pathways of interest from our significant gene list


Genes

GenBank ID

Probe set ID

Fold change
Apoptosis/cell cycle regulation    
    Ataxia telangiectasia mutated (includes complementation groups A, C, and D)  U26455   2000_at   0.6  
    Annexin A2  D00017   769_s_at   1.1  
    Caspase 7, apoptosis-related cysteine protease  U67319   38281_at   1.3  
    CASP2 and RIPK1 domain-containing adaptor with death domain  U79115   822_s_at   1.3  
    Growth arrest and DNA damage-inducible, beta  AF078077   39822_s_at   1.3  
    BCL2/adenovirus E1B 19 kDa interacting protein 3-like  AF079221   39436_at   1.4  
Cell signaling    
    AXL receptor tyrosine kinase  M76125   1233_s_at   1.1  
    Phosphodiesterase 3B, cGMP-inhibited  D50640   35872_at   0.7  
    Diacylglycerol kinase, alpha 80 kDa  X62535   32716_at   0.8  
    Janus kinase 1 (a protein tyrosine kinase)  M64174   1457_at   0.9  
    Inositol 1,4,5-triphosphate receptor, type 3  U01062   37343_at   0.7  
    Mitogen-activated protein kinase 8 interacting protein 1  AF007134   41279_f_at   0.7  
    Janus kinase 2 (a protein tyrosine kinase)  AF058925   37468_at   1.5  
    Signal transducer and activator of transcription 1 91 kDa  M97935   32860_g_at   2.0  
    Guanylate cyclase 1, soluble, beta 3  X66533   37243_at   1.5  
    Cyclin-dependent kinase inhibitor 1A (p21, Cip1)  U03106   2031_s_at   3.1  
Oxidoreductase/antioxidant/stress response    
    Ferritin light polypeptide  AL049365   34788_at   0.7  
    Thioredoxin reductase 1  X91247   39425_at   1.1  
    Peroxiredoxin 4  U25182   38435_at   1.2  
    Thioredoxin  AI653621   36992_at   1.3  
    ATX1 antioxidant protein 1 homolog (yeast)  U70660   41776_at   1.2  
    Glutathione-S-transferase-like; glutathione transferase omega  U90313   824_at   1.6  
    Biliverdin reductase A  X93086   32618_at   1.5  
    Glutathione peroxidase 1  X13710   37033_s_at   1.5  
    Biliverdin reductase B (flavin reductase [NADPH])  D32143   37002_at   1.6  
    Heme oxygenase (decycling) 1  Z82244   33802_at   2.1  
Inflammation/angiogenesis/coagulation-thrombosis    
    Interleukin 15  AF031167   38488_s_at   1.5  
    Endothelial cell growth factor 1 (platelet-derived)  M63193   36879_at   1.6  
    Adrenomedullin  D14874   34777_at   1.5  
    Integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)  M35999   37952_at   2.5  
    Integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)  M34480   40644_g_at   2.5  
    Selectin P (granule membrane protein 140 kDa, antigen CD62)  M25322   40366_at   2.5  
    Coagulation factor XIII, A1 polypeptide
 
M14539
 
38052_at
 
1.8
 

Genes

GenBank ID

Probe set ID

Fold change
Apoptosis/cell cycle regulation    
    Ataxia telangiectasia mutated (includes complementation groups A, C, and D)  U26455   2000_at   0.6  
    Annexin A2  D00017   769_s_at   1.1  
    Caspase 7, apoptosis-related cysteine protease  U67319   38281_at   1.3  
    CASP2 and RIPK1 domain-containing adaptor with death domain  U79115   822_s_at   1.3  
    Growth arrest and DNA damage-inducible, beta  AF078077   39822_s_at   1.3  
    BCL2/adenovirus E1B 19 kDa interacting protein 3-like  AF079221   39436_at   1.4  
Cell signaling    
    AXL receptor tyrosine kinase  M76125   1233_s_at   1.1  
    Phosphodiesterase 3B, cGMP-inhibited  D50640   35872_at   0.7  
    Diacylglycerol kinase, alpha 80 kDa  X62535   32716_at   0.8  
    Janus kinase 1 (a protein tyrosine kinase)  M64174   1457_at   0.9  
    Inositol 1,4,5-triphosphate receptor, type 3  U01062   37343_at   0.7  
    Mitogen-activated protein kinase 8 interacting protein 1  AF007134   41279_f_at   0.7  
    Janus kinase 2 (a protein tyrosine kinase)  AF058925   37468_at   1.5  
    Signal transducer and activator of transcription 1 91 kDa  M97935   32860_g_at   2.0  
    Guanylate cyclase 1, soluble, beta 3  X66533   37243_at   1.5  
    Cyclin-dependent kinase inhibitor 1A (p21, Cip1)  U03106   2031_s_at   3.1  
Oxidoreductase/antioxidant/stress response    
    Ferritin light polypeptide  AL049365   34788_at   0.7  
    Thioredoxin reductase 1  X91247   39425_at   1.1  
    Peroxiredoxin 4  U25182   38435_at   1.2  
    Thioredoxin  AI653621   36992_at   1.3  
    ATX1 antioxidant protein 1 homolog (yeast)  U70660   41776_at   1.2  
    Glutathione-S-transferase-like; glutathione transferase omega  U90313   824_at   1.6  
    Biliverdin reductase A  X93086   32618_at   1.5  
    Glutathione peroxidase 1  X13710   37033_s_at   1.5  
    Biliverdin reductase B (flavin reductase [NADPH])  D32143   37002_at   1.6  
    Heme oxygenase (decycling) 1  Z82244   33802_at   2.1  
Inflammation/angiogenesis/coagulation-thrombosis    
    Interleukin 15  AF031167   38488_s_at   1.5  
    Endothelial cell growth factor 1 (platelet-derived)  M63193   36879_at   1.6  
    Adrenomedullin  D14874   34777_at   1.5  
    Integrin, beta 3 (platelet glycoprotein IIIa, antigen CD61)  M35999   37952_at   2.5  
    Integrin, alpha 2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)  M34480   40644_g_at   2.5  
    Selectin P (granule membrane protein 140 kDa, antigen CD62)  M25322   40366_at   2.5  
    Coagulation factor XIII, A1 polypeptide
 
M14539
 
38052_at
 
1.8
 

These genes are taken from the broader list of 385 genes with false discovery rate of less than 10% and no fold-change filters.

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