Table 4.

Analysis of 28 common genes overexpressed in pooled huES cell lines compared with EB by EST enumeration


Gene name

Accession no.

ES

EB

ES/EB
HSPA4  AB023420  9   0   OE* 
ELOVL6  NM_024090  5   0   OE* 
LEFTB  AF081507  4   0   OE  
PTTG1  AJ223953  4   0   OE  
CYP26A1  AF005418  4   0   OE  
PSMA3  D00762  3   0   OE  
C20orf129  BC001068  3   0   OE  
FABP5  M94856  3   0   OE  
KIAA1573  AB046793  2   0   OE  
ZNF257  AF070651  2   0   OE  
FLJ12581/Nanog  NM_024865  2   0   OE  
CRABP1  S74445  1   0   OE  
TDGF1  X14253  20   1   OE* 
SEMA6A  AF225425  16   1   OE* 
NASP  M97856  58   7   OE* 
CCNB1  M25753  8   1   OE* 
SFRP2  AF311912  7   1   OE* 
RPL17  X53777  7   1   OE* 
JADE-1  NM_024900  6   1   OE  
RAMP  NM_016448  6   1   OE  
NS  NM_014366  5   1   OE  
TNNT1  M19309Ê   5   1   OE  
MGC27165 J04164  4   1   OE  
HDAC2  U31814  4   1   OE  
KPNA2  U28386  19   6   OE* 
SLC16A1  AL162079  22   7   OE* 
CCNC  M740914  3   1   OE  
MGST1
 
J03746
 
3
 
1
 
OE
 

Gene name

Accession no.

ES

EB

ES/EB
HSPA4  AB023420  9   0   OE* 
ELOVL6  NM_024090  5   0   OE* 
LEFTB  AF081507  4   0   OE  
PTTG1  AJ223953  4   0   OE  
CYP26A1  AF005418  4   0   OE  
PSMA3  D00762  3   0   OE  
C20orf129  BC001068  3   0   OE  
FABP5  M94856  3   0   OE  
KIAA1573  AB046793  2   0   OE  
ZNF257  AF070651  2   0   OE  
FLJ12581/Nanog  NM_024865  2   0   OE  
CRABP1  S74445  1   0   OE  
TDGF1  X14253  20   1   OE* 
SEMA6A  AF225425  16   1   OE* 
NASP  M97856  58   7   OE* 
CCNB1  M25753  8   1   OE* 
SFRP2  AF311912  7   1   OE* 
RPL17  X53777  7   1   OE* 
JADE-1  NM_024900  6   1   OE  
RAMP  NM_016448  6   1   OE  
NS  NM_014366  5   1   OE  
TNNT1  M19309Ê   5   1   OE  
MGC27165 J04164  4   1   OE  
HDAC2  U31814  4   1   OE  
KPNA2  U28386  19   6   OE* 
SLC16A1  AL162079  22   7   OE* 
CCNC  M740914  3   1   OE  
MGST1
 
J03746
 
3
 
1
 
OE
 

EST enumeration was done as described in R.B. et al (unpublished data, August 2003). Columns ES and EB indicate the number of ESTs found for a particular gene. The Fisher exact test (P ≤ .05 was used to determine whether the difference in EST number is likely to reflect a real difference in expression levels. OE indicates a gene overexpressed in the ES cells. For lower copy number (5 ESTs and below in ES and 0 in EB, or less than 7 ESTs in ES and 1 in EB) the test cannot determine significance, even though the differences might be real. The signal of all genes was ≥ 3-fold higher compared with huURNA in microarray experiments.

*

Genes significantly overexpressing ES compared with EB.

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