Analysis of 28 common genes overexpressed in pooled huES cell lines compared with EB by EST enumeration
Gene name . | Accession no. . | ES . | EB . | ES/EB . |
---|---|---|---|---|
HSPA4 | AB023420 | 9 | 0 | OE* |
ELOVL6 | NM_024090 | 5 | 0 | OE* |
LEFTB | AF081507 | 4 | 0 | OE |
PTTG1 | AJ223953 | 4 | 0 | OE |
CYP26A1 | AF005418 | 4 | 0 | OE |
PSMA3 | D00762 | 3 | 0 | OE |
C20orf129 | BC001068 | 3 | 0 | OE |
FABP5 | M94856 | 3 | 0 | OE |
KIAA1573 | AB046793 | 2 | 0 | OE |
ZNF257 | AF070651 | 2 | 0 | OE |
FLJ12581/Nanog | NM_024865 | 2 | 0 | OE |
CRABP1 | S74445 | 1 | 0 | OE |
TDGF1 | X14253 | 20 | 1 | OE* |
SEMA6A | AF225425 | 16 | 1 | OE* |
NASP | M97856 | 58 | 7 | OE* |
CCNB1 | M25753 | 8 | 1 | OE* |
SFRP2 | AF311912 | 7 | 1 | OE* |
RPL17 | X53777 | 7 | 1 | OE* |
JADE-1 | NM_024900 | 6 | 1 | OE |
RAMP | NM_016448 | 6 | 1 | OE |
NS | NM_014366 | 5 | 1 | OE |
TNNT1 | M19309Ê | 5 | 1 | OE |
MGC27165 | J04164 | 4 | 1 | OE |
HDAC2 | U31814 | 4 | 1 | OE |
KPNA2 | U28386 | 19 | 6 | OE* |
SLC16A1 | AL162079 | 22 | 7 | OE* |
CCNC | M740914 | 3 | 1 | OE |
MGST1 | J03746 | 3 | 1 | OE |
Gene name . | Accession no. . | ES . | EB . | ES/EB . |
---|---|---|---|---|
HSPA4 | AB023420 | 9 | 0 | OE* |
ELOVL6 | NM_024090 | 5 | 0 | OE* |
LEFTB | AF081507 | 4 | 0 | OE |
PTTG1 | AJ223953 | 4 | 0 | OE |
CYP26A1 | AF005418 | 4 | 0 | OE |
PSMA3 | D00762 | 3 | 0 | OE |
C20orf129 | BC001068 | 3 | 0 | OE |
FABP5 | M94856 | 3 | 0 | OE |
KIAA1573 | AB046793 | 2 | 0 | OE |
ZNF257 | AF070651 | 2 | 0 | OE |
FLJ12581/Nanog | NM_024865 | 2 | 0 | OE |
CRABP1 | S74445 | 1 | 0 | OE |
TDGF1 | X14253 | 20 | 1 | OE* |
SEMA6A | AF225425 | 16 | 1 | OE* |
NASP | M97856 | 58 | 7 | OE* |
CCNB1 | M25753 | 8 | 1 | OE* |
SFRP2 | AF311912 | 7 | 1 | OE* |
RPL17 | X53777 | 7 | 1 | OE* |
JADE-1 | NM_024900 | 6 | 1 | OE |
RAMP | NM_016448 | 6 | 1 | OE |
NS | NM_014366 | 5 | 1 | OE |
TNNT1 | M19309Ê | 5 | 1 | OE |
MGC27165 | J04164 | 4 | 1 | OE |
HDAC2 | U31814 | 4 | 1 | OE |
KPNA2 | U28386 | 19 | 6 | OE* |
SLC16A1 | AL162079 | 22 | 7 | OE* |
CCNC | M740914 | 3 | 1 | OE |
MGST1 | J03746 | 3 | 1 | OE |
EST enumeration was done as described in R.B. et al (unpublished data, August 2003). Columns ES and EB indicate the number of ESTs found for a particular gene. The Fisher exact test (P ≤ .05 was used to determine whether the difference in EST number is likely to reflect a real difference in expression levels. OE indicates a gene overexpressed in the ES cells. For lower copy number (5 ESTs and below in ES and 0 in EB, or less than 7 ESTs in ES and 1 in EB) the test cannot determine significance, even though the differences might be real. The signal of all genes was ≥ 3-fold higher compared with huURNA in microarray experiments.
Genes significantly overexpressing ES compared with EB.