Table 3.

Genes with lower levels of expression in MLBCL*


Gene class and specific genes

Fold change
B-cell receptor components and signaling cascade  
   IgM§  5.1  
   B-cell lymphocyte kinase (BLK)  2.7  
   SH3 domain-binding protein (SAB) (BTK-associated binding protein)   2.0  
   B-cell linker protein (BLNK)  1.5  
   PKCβI  2.0  
   NFATc  2.0  
   AKT-1   1.5  
   CD22  2.6  
Transcription factors  
   Spi-B  1.6  
   Ikaros   1.5  
   FOXP1   2.0  
Class II MHC components§  
   DOβ  1.9  
   DQβ   2.0  
   DMα   1.5  
Germinal center and other B-cell markers  
   CD10   3.1  
   SPAP1 (SH2 domain-containing phosphatase anchor protein, IRTA 4)   2.4  
   Protein tyrosine phosphatase receptor type C (PTPRCAP)   1.4  
TNF family members  
   Transmembrane activator and CAML interactor (TAC1) (TNFRSF13B)   1.5  
   CD27 (TNFRSF7)   1.7  
   TRAF5  1.5  
Cytokines  
   Interleukin-16
 
1.4
 

Gene class and specific genes

Fold change
B-cell receptor components and signaling cascade  
   IgM§  5.1  
   B-cell lymphocyte kinase (BLK)  2.7  
   SH3 domain-binding protein (SAB) (BTK-associated binding protein)   2.0  
   B-cell linker protein (BLNK)  1.5  
   PKCβI  2.0  
   NFATc  2.0  
   AKT-1   1.5  
   CD22  2.6  
Transcription factors  
   Spi-B  1.6  
   Ikaros   1.5  
   FOXP1   2.0  
Class II MHC components§  
   DOβ  1.9  
   DQβ   2.0  
   DMα   1.5  
Germinal center and other B-cell markers  
   CD10   3.1  
   SPAP1 (SH2 domain-containing phosphatase anchor protein, IRTA 4)   2.4  
   Protein tyrosine phosphatase receptor type C (PTPRCAP)   1.4  
TNF family members  
   Transmembrane activator and CAML interactor (TAC1) (TNFRSF13B)   1.5  
   CD27 (TNFRSF7)   1.7  
   TRAF5  1.5  
Cytokines  
   Interleukin-16
 
1.4
 
*

Gene list derived from the top 400 genes with lower levels of expression in MLBCL. All genes significant at P < .01

Fold change compared with DLBCL

Previously identified as having reduced expression in Hodgkin Reed-Sternberg cells: IgM, CD22, BLK, PKCβI/II, BLNK, NFATc, Spi-B, class II DOβ, TRAF5, and IL-16.17 

§

Previously identified as having reduced expression in MLBCL: Ig2 and MHC class II.41 

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