Table 1.

Potential human transcriptional regulators selected from the human CD34+ transcriptosome database

UniGene cluster IDGene nameGene descriptionBandFBAbundanceCharacterization
Transcription       
 Hs.321677 STAT3 Signal transducer and activator of transcription 3 (acute-phase response factor) 17q21 437.5 VH W 
 Hs.78881 MEF2B MADS box transcription enhancer factor 2, polypeptide B (myocyte enhancer factor 2B) 19p12 432.8 VH W 
 Hs.96055 E2F1 E2F transcription factor 1 20q11.2 224.9 VH W 
 *Hs.192861 SPIB Spi-B transcription factor (Spi-1/PU.1 related) 19q13.3-q13.4 207.0 VH W 
 Hs.22302 GTF3C4 General transcription factor IIIC, polypeptide 4 (90 kd) 9 200.8 VH W 
 Hs.74861 PC4 Activated RNA polymerase II transcription cofactor 4 8 151.9 VH W 
 Hs.3005 TFAP4 Transcription factor AP-4 (activating enhancer-binding protein 4) 16p13 146.9 VH W 
 Hs.79353 TFDP1 Transcription factor Dp-1 13q34 144.2 VH W  
 Hs.2815 POU6F1 POU domain, class 6, transcription factor 1 12 138.6 VH PC 
 Hs.19131 TFDP2 Transcription factor Dp-2 (E2F dimerization partner 2) 3q23 118.5 VH W  
 Hs.158195 HSF2 Heat shock transcription factor 2 6pter-p25.1 110.9 VH W 
 Hs.239720 CNOT2 CCR4-NOT transcription complex, subunit 2 12 99.4 H PC  
 Hs.93748  Homo sapiens clone moderately similar to transcription factor BTF3 N/A 81.7 H N  
 Hs.110103 RRN3 RNA polymerase I transcription factor RRN3 16p12 68.9 H W 
 Hs.334334 TFAP2A Transcription factor AP-2 α (activating enhancer-binding protein 2 alpha) 6p24 63.8 H W 
 Hs.80598 TCEA2 Transcription elongation factor A (SII), 2 N/A 59.4 H W  
 Hs.108106 ICBP90 Transcription factor 19p13.3 54.0 H PC 
 Hs.154970 TFCP2 Transcription factor CP2 12q13 48.0 H W  
 Hs.294101 PBX3 Pre–B-cell leukemia transcription factor 3 9q33-q34 43.1 H PC 
 *Hs.274184 TFE3 Transcription factor binding to IGHM enhancer 3 Xp11.22 40.9 H W 
 Hs.108371 E2F4 E2F transcription factor 4, p107/p130-binding 16q21-q22 40.4 H W 
 Hs.95243 TCEAL1 Transcription elongation factor A (SII)-like 1 Xq22.1 38.8 H W 
 Hs.1706 ISGF3G Interferon-stimulated transcription factor 3, γ (48 kd) 14q11.2 37.9 H W 
 Hs.9754 ATF5 Activating transcription factor 5 19q13.3 34.6 H W  
 Hs.244613 STAT5B Signal transducer and activator of transcription 5B 17q11.2 33.6 H W 
 Hs.169294 TCF7 Transcription factor 7 (T-cell specific, HMG-box) 5q31.1 31.7 H W 
 Hs.249184 TCF19 Transcription factor 19 (SC1) 6p21.3 29.5 H PC 
 Hs.7647 MAZ MYC-associated zinc finger protein (purine-binding transcription factor) 16p11.2 27.3 H W 
 Hs.29417 ZF HCF-binding transcription factor Zhangfei 11q14 24.0 I PC 
 Hs.155313 DATF1 Death-associated transcription factor 1 20 22.3 I PC  
 Hs.182280 MEF2A MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A) 15q26 21.5 I W  
 Hs.26703 CNOT8 CCR4-NOT transcription complex, subunit 8 5q31-q33 21.4 I PC 
 Hs.279818 AF093680 Similar to mouse Glt3 or D malanogaster transcription factor IIB 16q13-q21 21.3 I W  
 Hs.1189 E2F3 E2F transcription factor 3 6p22 21.0 I W 
 Hs.68257 GTF2F1 General transcription factor IIF, polypeptide 1 (74-kD subunit) 19p13.3 19.0 I W 
 Hs.197540 HIF1A Hypoxia-inducible factor 1, α subunit (basic helix-loop-helix transcription factor) 14q21-q24 16.4 I W 
 *Hs.211588 POU4F1 POU domain, class 4, transcription factor 1 13q21.1-q22 15.9 I W 
 *Hs.155321 SRF Serum response factor (c-fos serum response element-binding transcription factor) 6pter-p24.1 15.1 I W 
 Hs.103989 NCYM DNA-binding transcriptional activator 2p24.1 14.9 I W 
 Hs.326198 TCF4 Transcription factor 4 18q21.1 14.7 I W 
 Hs.75133 TCF6L1 Transcription factor 6–like 1 (mitochondrial transcription
factor 1–like) 		7pter-cen 14.2 I W 
 Hs.101025 BTF3 Basic transcription factor 3 5 14.1 I W  
 Hs.166096 ELF3 E74-like factor 3 (ets domain transcription factor, epithelial specific) 1q32.2 13.8 I W  
 Hs.797 NFYA Nuclear transcription factor Y, α 6p21.3 13.7 I W 
 Hs.129914 RUNX1 Runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) 21q22.3 13.6 I W 
 Hs.247433 ATF6 Activating transcription factor 6 1q22-q23 13.5 I W  
 Hs.90304 GTF2H3 General transcription factor IIH, polypeptide 3 (34-kd subunit) 12 11.9 I W 
 Hs.78061 TCF21 Transcription factor 21 6pter-qter 11.1 I PC  
 Hs.75113 GTF3A General transcription factor IIIA 13q12.3-q13.1 10.0 I W 
 Hs.93728 PBX2 Pre–B-cell leukemia transcription factor 2 6p21.3 9.8 L W 
 Hs.16697 DR1 Down-regulator of transcription 1, TBP-binding (negative cofactor 2) 1p22.1 9.8 L W 
 Hs.182237 POU2F1 POU domain, class 2, transcription factor 1 1q22-q23 9.7 L W  
 Hs.765 GATA1 GATA-binding protein 1 (globin transcription factor 1) Xp11.23 9.0 L W 
 Hs.101842 ATBF1 AT-binding transcription factor 1 16q22.3-q23.1 8.7 L W 
 Hs.211581 MTF1 Metal-regulatory transcription factor 1 1p33 8.2 L W  
 Hs.173854 PAXIP1L PAX transcription activation domain interacting protein 1 like 7q36 8.2 L N  
 Hs.197764 TITF1 Thyroid transcription factor 1 14q13 8.0 L W 
 Hs.2982 SP4 Sp4 transcription factor 7p15 7.6 L W  
 Hs.59506 DMRT2 Doublesex and mab-3–related transcription factor 2 9p24.3 7.0 L PC 
 Hs.21486 STAT1 Signal transducer and activator of transcription 1, 91 kd 2q32.2 6.9 L W 
 Hs.278589 GTF2I General transcription factor II, i 7q11.23 6.6 L W  
 Hs.121895 RUNX2 Runt-related transcription factor 2 6p21 6.6 L W 
 Hs.460 ATF3 Activating transcription factor 3 1 6.3 L W  
 Hs.268115  ESTs, weakly similar toT08599 probable transcription factor CA150 [H sapiens] N/A 6.3 L N 
 Hs.171626 TCEB1L Transcription elongation factor B (SIII), polypeptide 1–like 5q31 6.1 L W 
 *Hs.1101 POU2F2 POU domain, class 2, transcription factor 2 19 6.1 L W 
 Hs.54780 TTF1 Transcription termination factor, RNA polymerase I 9 5.9 L W 
 *Hs.89781 UBTF Upstream binding transcription factor, RNA polymerase I 17q21.3 5.8 L W 
 *Hs.14963 FACTP140 Chromatin-specific transcription elongation factor, 140-kd subunit 14 5.8 L W 
 Hs.198166 ATF2 Activating transcription factor 2 2q32 5.7 L W  
 Hs.30824 LZTFL1 Leucine zipper transcription factor–like 1 3p21.3 5.5 L N 
 Hs.108300 CNOT3 CCR4-NOT transcription complex, subunit 3 19q13.4 5.3 L W 
 Hs.166017 MITF Microphthalmia-associated transcription factor 3p14.1-p12.3 5.0 L W 
 Hs.181243 ATF4 Activating transcription factor 4 (tax-responsive enhancer element B67) 22q13.1 4.9 L W 
 Hs.2331 E2F5 E2F transcription factor 5, p130-binding 8p22 4.9 L W 
 Hs.173638 TCF7L2 Transcription factor 7–like 2 (T-cell specific, HMG-box) 10q25.3 4.9 L W 
 Hs.24572  ESTs, weakly similar to TC17_human transcription
factor 17 [H sapiens] 		N/A 4.8 L N 
 Hs.191356 GTF2H2 General transcription factor IIH, polypeptide 2 (44-kd subunit) 5q12.2-q13.3 4.6 L W 
 *Hs.78869 TCEA1 Transcription elongation factor A (SII), 1 3p22-p21.3 4.6 L W 
 Hs.170019 RUNX3 Runt-related transcription factor 3 1p36 4.4 L W  
 Hs.154276 BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 21q22.11 4.4 L W  
 Hs.184771 NFIC Nuclear factor I/C (CCAAT-binding transcription factor) 19p13.3 4.4 L W  
 Hs.89578 GTF2H1 General transcription factor IIH, polypeptide 1 (62-kd subunit) 11p15.1-p14 4.3 L W 
 Hs.227630 REST RE1-silencing transcription factor 4q12-q13.3 4.3 L W 
 Hs.21704 TCF12 Transcription factor 12 (HTF4,helix-loop-helix transcription factors 4) 15q21 4.3 L PC 
 Hs.226318 CNOT7 CCR4-NOT transcription complex, subunit 7 8p22-p21.3 4.1 L PC 
 *Hs.13063 CA150 Transcription factor CA150 5q31 4.1 L W  
 Hs.150557 BTEB1 Basic transcription element binding protein 1 9q13 4.1 L W 
 Hs.84928 NFYB Nuclear transcription factor Y, β 12q22-q23 4.1 L W  
 Hs.35841 NFIX Nuclear factor I/X (CCAAT-binding transcription factor) 19p13.3 4.0 L PC 
 Hs.151139 ELF4 E74-like factor 4 (ets domain transcription factor) Xq26 3.9 L W  
 Hs.78995 MEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) 5q14 3.9 L W  
 Hs.97996 MTERF Transcription termination factor, mitochondrial 7q21-q22 3.9 L W 
 Hs.119018 NRF Transcription factorNRF Xp21.1-q25 3.8 L W 
 Hs.100932 TCF17 Transcription factor 17 5q35.3 3.5 L PC  
 Hs.92282 PITX2 Pairedlike homeodomain transcription factor 2 4q25-q27 3.4 L PC 
 Hs.169853 TCF2 Transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor 17cen-q21.3 3.4 L W 
 Hs.181015 STAT6 Signal transducer and activator of transcription 6, interleukin-4 induced 12q13 3.3 L W 
 Hs.97624 HSF2BP Heat shock transcription factor 2 binding protein 21q22.3 3.2 L PC 
 Hs.171185 P38IP Transcription factor (p38 interacting protein) 13q12.213q14.2 3.2 L N 
 Hs.184693 TCEB1 Transcription elongation factor B (SIII), polypeptide 1 (15 kd, elongin C) 8 3.1 L W 
 Hs.20423 CNOT4 CCR4-NOT transcription complex, subunit 4 7q22-qter 3.1 L PC  
 Hs.76362 GTF2A2 General transcription factor IIA, 2 (12-kd subunit) 15q11.2 3.1 L W 
 *Hs.2430 TCFL1 Transcription factor–like 1 1q21 3.0 L PC  
 Hs.166 SREBF1 Sterol regulatory element binding transcription factor 1 17p11.2 3.0 L W 
Zinc       
 *Hs.194688 BAZ1B Bromodomain adjacent to zinc finger domain, 1B 7q11.23 439.3 VH PC 
 Hs.150390 ZNF262 Zinc finger protein 262 1p32-p34 369.5 VH N  
 Hs.1148 ZFP Zinc finger protein 3p22.3-p21.1 244.4 VH N 
 Hs.301637 ZNF258 Zinc finger protein 258 14q12 231.9 VH N  
 Hs.6557 ZNF161 Zinc finger protein 161 3q26.2 139.7 VH PC 
 Hs.108139 ZNF212 Zinc finger protein 212 7q36.1 118.5 VH N  
 Hs.169832 ZNF42 Zinc finger protein 42 (myeloid-specific retinoic acid–responsive) 19q13.2-q13.4 117.3 VH W 
 Hs.277401 BAZ2A Bromodomain adjacent to zinc finger domain, 2A 12q24.3-qter 108.3 VH N 
 Hs.151689 ZNF137 Zinc finger protein 137 (clone pHZ-30) 19q13.4 107.3 VH N  
 Hs.96448 ZNF193 Zinc finger protein 193 6p21.3 105.2 VH N 
 *Hs.58167 ZNF282 Zinc finger protein 282 7q35-q36 98.4 H PC  
 Hs.3057 ZNF74 Zinc finger protein 74 (Cos52) 22q11.21 88.8 H PC 
 Hs.70617 ZNF33A Zinc finger protein 33a (KOX 31) 10p11.2 78.6 H N 
 Hs.165983 FLJ22504 Hypothetical C2H2 zinc finger protein FLJ22504 20q11.21q13.12 62.6 H N 
 Hs.27801 ZNF278 Zinc finger protein 278 22q12.2 57.8 H W  
 Hs.194718 ZNF265 Zinc finger protein 265 1p31 57.2 H PC 
 Hs.142634 AF020591 Zinc finger protein 19 50.6 H N  
 Hs.183593 ZNF24 Zinc finger protein 24 (KOX 17) 18q12 46.1 H PC 
 Hs.180677 ZNF162 Zinc finger protein 162 11q13 46.0 H W  
 Hs.288773 ZNF294 Zinc finger protein 294 21q22.11 40.8 H N 
 Hs.22879 LOC51193 Zinc finger protein ANC_2H01 3q25.1-q25.33 39.5 H N 
 Hs.13128 ZNF205 Zinc finger protein 205 16p13.3 35.9 H N  
 Hs.182528 ZNF263 Zinc finger protein 263 16 35.4 H PC 
 Hs.119014 ZNF175 Zinc finger protein 175 19q13.4 29.9 H N  
 Hs.117077 ZNF264 Zinc finger protein 264 19q13.4 27.4 H N 
 *Hs.82210 ZNF220 Zinc finger protein 220 8p11 24.5 I PC  
 Hs.12940 ZHX1 Zinc-fingers and homeoboxes 1 8q 24.0 I PC 
 Hs.8383 BAZ2B Bromodomain adjacent to zinc finger domain, 2B 2q23-q24 22.5 I N  
 Hs.288658 ZNF35 Zinc finger protein 35 (clone HF.10) 3p22-p21 22.1 I PC 
 Hs.132390 ZNF36 Zinc finger protein 36 (KOX 18) 7q21.3-q22.1 21.4 I N 
 Hs.7137 LOC57862 Clones 23667 and 23775 zinc finger protein 14q24.3 20.3 I N  
 Hs.110839 ZFP95 Zinc finger protein homologous to Zfp95 in mouse 7q22 15.5 I N 
 Hs.10590 ZNF313 Zinc finger protein 313 20q11.21q11.23 15.1 I N  
 Hs.86356  EST, weakly similar to Z117_human zinc finger
protein 117 [H sapiens] 		N/A 14.3 I N 
 Hs.48589 ZNF228 Zinc finger protein 228 19q13.2 14.1 I N  
 Hs.50216 ZFD25 Zinc finger protein (ZFD25) 7q11.2 12.5 I N 
 Hs.301819 ZNF146 Zinc finger protein 146 19q13.1 10.9 I PC  
 Hs.74107 ZNF43 Zinc finger protein 43 (HTF6) 19p13.1-p12 10.6 I PC 
 Hs.33532 ZNF151 Zinc finger protein 151(pHZ-67) 1p36.2-p36.1 10.4 I W 
 Hs.20047 ZNFN2A1 Zinc finger protein, subfamily 2A (FYVE domain containing), 1 14q22-q24 10.4 I N 
 Hs.289104 ABP/ZF Alu-binding protein with zinc finger domain 7 10.3 I N  
 Hs.57419 CTCF CCCTC-binding factor (zinc finger protein) 16q21-q22.3 9.9 L W 
 *Hs.2110 ZNF9 Zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) 3q13.3-q24 9.8 L PC  
 Hs.93005 SLUG Slug (chicken homolog), zinc finger protein 8q11 9.8 L W 
 *Hs.158174 ZNF184 Zinc finger protein 184 (Kruppel-like) 6p21.3 9.8 L N 
 Hs.59757 ZNF281 Zinc finger protein 281 1q32.1 9.7 L PC 
 *Hs.15220 ZFP106 Zinc finger protein 106 15 9.6 L N  
 Hs.237786 ZNF187 Zinc finger protein 187 6p22 8.9 L PC  
 Hs.62112 ZNF207 Zinc finger protein 207 17 8.8 L N 
 Hs.270435 FLJ12985 Hypothetical protein FLJ12985, human zinc finger
protein 91 		19q12 8.7 L N 
 Hs.89732 ZNF273 Zinc finger protein 273 N/A 8.4 L N  
 Hs.29159 ZNF75 Zinc finger protein 75 (D8C6) Xq26 8.0 L N 
 Hs.24125 LOC51780 Putative zinc finger protein 5q31 7.8 L PC 
 Hs.301059 FLJ12488 Hypothetical protein FLJ12488, moderately human zinc
finger protein 93 		N/A 7.5 L N  
 Hs.19585 SZF1 KRAB-zinc finger protein SZF1-1 3p21 7.2 L PC 
 Hs.154095 ZNF143 Zinc finger protein 143 (clone pHZ-1) 11p15.4 7.1 L PC 
 *Hs.30503  H sapiens cDNA FLJ11344 fis, clone PLACE1010870, moderately similar to zinc finger protein 91 N/A 7.0 L N 
 Hs.9786 ZNF275 Zinc finger protein 275 N/A 6.7 L N  
 Hs.3053 ZID Zinc finger protein with interaction domain 9q33.1-q33.3 6.3 L PC 
 Hs.20631 PEGASUS Zinc finger protein, subfamily 1A, 5 (Pegasus) 10q26 6.0 L PC  
 Hs.20082 ZNF3 Zinc finger protein 3 (A8-51) 5 5.9 L N 
 *Hs.108642 ZNF22 Zinc finger protein 22(KOX 15) 10q11 5.5 L N 
 Hs.78743 ZNF131 Zinc finger protein 131 (clone pHZ-10) 5p12-p11 5.5 L N  
 Hs.29222 ZNF76 Zinc finger protein 76 (expressed in testis) 6p21.3-p21.2 5.4 L PC 
 *Hs.287331 ZNF286 Zinc finger proteinZNF286 17p11.2 5.3 L N 
 *Hs.69997 ZNF238 Zinc finger protein 238 1q44-qter 5.3 L PC  
 Hs.109526 ZNF198 Zinc finger protein 198 13q11-q12 5.3 L PC 
 Hs.85505  ESTs, weakly similar toZF37_human zinc finger
proteinZFP-37 [H sapiens] 		N/A 5.3 L N  
 Hs.48029 SNAI1 Snail 1 (Drosophila homolog), zinc finger protein 20q13.1-q13.2 5.1 L PC 
 Hs.172979 ZNF177 Zinc finger protein 177 19pter-19p13.3 4.8 L PC 
 Hs.155204 ZNF174 Zinc finger protein 174 16p13.3 4.8 L PC  
 Hs.86371 ZNF254 Zinc finger protein 254 19p13.12-p13.11 4.8 L N 
 Hs.180248 ZNF124 Zinc finger protein 124(HZF-16) 1q44 4.6 L PC 
 Hs.279914 ZNF232 Zinc finger protein 232 17p13-p12 4.6 L PC  
 Hs.15110 ZNF211 Zinc finger protein 211 19q13.4 4.3 L N 
 Hs.55481 ZNF165 Zinc finger protein 165 6p21.3 4.3 L N  
 Hs.33268  H sapiens weakly similar to zinc finger protein 84 N/A 4.2 L N  
 Hs.197219 ZNF14 Zinc finger protein 14 (KOX 6) 19p13.3-p13.2 4.2 L N 
 Hs.296365 ZF5128 Zinc finger protein 19 4.1 L N 
 Hs.22182 ZNF23 Zinc finger protein 23 (KOX 16) 16q22 4.1 L N  
 Hs.183291 ZNF268 Zinc finger protein 268 5 4.0 L N 
 Hs.156000 ZFP161 Zinc finger protein homologous toZfp161 in mouse 18pter-p11.2 4.0 L N 
 Hs.72318  H sapiens moderately similar to zinc finger protein 91 N/A 4.0 L N 
 Hs.64794 ZNF183 Zinc finger protein 183 (RING finger, C3HC4 type) Xq25-q26 4.0 L N 
 *Hs.110956 ZNF20 Zinc finger protein 20(KOX 13) 19p13.3-p13.2 4.0 L PC 
 Hs.184669 ZNF144 Zinc finger protein 144(Mel-18) 17 3.7 L W 
 Hs.23476 CIZ1 Cip1-interacting zinc finger protein 9q34.1 3.4 L PC  
 Hs.31324 ZNF155 Zinc finger protein 155(pHZ-96) 19q13.2-q13.32 3.2 L N 
 Hs.23019 ZNF16 Zinc finger protein 16 (KOX 9) 8q24 3.1 L N  
 Hs.88219 ZNF200 Zinc finger protein 200 16p13.3 3.1 L N 
Activator       
 Hs.146847 TANK TRAF family member-associated NFKB activator 2q24-q31 84.0 H W 
 Hs.40403 CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 Xq13.1 37.8 H W 
 Hs.198468 PPARGC1 Peroxisome proliferative activated receptor, γ, coactivator 1 4p15.1 13.7 I W 
 Hs.82071 CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 6q23.3 12.3 I W 
 Hs.3076 MHC2TA MHC class II transactivator 16p13 10.0 I W 
 Hs.283689 ACT Activator of CREM in testis 6q16.1-q16.3 3.9 L W 
 Hs.79093 p100 EBNA-2 coactivator (100 kd) 7q31.3 3.0 L PC 
Enhancer       
 Hs.83958 TLE4 Transducinlike enhancer of split 4, homolog of DrosophilaE(sp1) 9 721.5 VH W  
 Hs.226573 IKBKB Inhibitor of κ light polypeptide gene enhancer in B-cells, kinase β 8p11.2 106.5 VH W 
 Hs.28935 TLE1 Transducinlike enhancer of split 1, homolog of Drosophila E(sp1) 19p13.3 58.4 H W 
 *Hs.75117 ILF2 Interleukin enhancer binding factor 2, 45 kd N/A 52.4 H W 
 Hs.234434 HEY1 Hairy/enhancer-of-split related with YRPW motif 1 8q21 29.9 H PC  
 Hs.81328 NFKBIA Nuclear factor of κ light polypeptide gene enhancer in B cells inhibitor, α 14q13 23.2 I W 
 Hs.332173 TLE2 Transducinlike enhancer of split 2, homolog of Drosophila E(sp1) 19p13.3 18.8 I W 
 Hs.99029 CEBPB CCAAT/enhancer binding protein(C/EBP), β 20q13.1 11.1 I W 
 Hs.256583 ILF3 Interleukin enhancer binding factor 3, 90 kd 19p13 10.0 I PC 
 *Hs.83428 NFKB1 Nuclear factor of κ light polypeptide gene enhancer in B cells 1 (p105) 4q24 9.7 L W 
 Hs.2227 CEBPG CCAAT/enhancer binding protein (C/EBP), γ 19 5.9 L W  
 Hs.9731 NFKBIB Nuclear factor of κ light polypeptide gene enhancer in B-cells inhibitor, β 19q13.1 4.6 L W  
 Hs.306 HIVEP1 Human immunodeficiency virus type I enhancer-binding protein 1 6p24-p22.3 3.8 L W 
 Hs.76722 CEBPD CCAAT/enhancer binding protein(C/EBP), δ 8p11.2-p11.1 3.8 L W 
Forkhead       
 Hs.44481 FOXF2 Forkhead box F2 6p25.3 151.3 VH PC 
 Hs.2714 FOXG1B Forkhead box G1B 14q12-q13 67.9 H W  
 Hs.56213  ESTs, highly similar to FXD3_human forkhead box
protein D3 [H sapiens] 		N/A 55.0 H N 
 Hs.239 FOXM1 Forkhead box M1 12p13 25.9 H W 
 Hs.155591 FOXF1 Forkhead box F1 16q24 21.8 I PC 
 Hs.112968 FOXE3 Forkhead box E3 1p32 7.9 L PC 
 Hs.284186 FOXC1 Forkhead box C1 6p25 6.3 L PC 
 *Hs.170133 FOXO1A Forkhead box O1A (rhabdomyosarcoma) 13q14.1 5.7 L PC 
 Hs.96028 FOXD1 Forkhead box D1 5q12-q13 4.5 L PC 
 Hs.120844 LOC55810 FOXJ2 forkhead factor 12pter-p13.31 4.1 L PC 
 Hs.93974 FOXJ1 Forkhead box J1 17q22-17q25 3.3 L PC 
Helix       
 Hs.76884 ID3 Inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 1p36.13-p36.12 30.8 H W 
 Hs.198998 CHUK Conserved helix-loop-helix ubiquitous kinase 10q24-q25 10 I W  
 Hs.30956 NHLH1 Nescient helix loop helix 1 1q22 8.2 L W 
 *Hs.34853 ID4 Inhibitor of DNA binding 4, dominant negative helix-loop-helix protein 6p22-p21 3.7 L W 
 Hs.46296 NHLH2 Nescient helix loop helix 2 1p12-p11 3.6 L PC  
 Hs.75424 ID1 Inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 20q11 3.3 L W 
Homeobox       
 Hs.55967 SHOX2 Sort stature homeobox 2 3q25-q26.1 220.3 VH PC 
 Hs.125231 HPX42B Hemopoietic progenitor homeobox 10q26 6.3 L PC 
 *Hs.90077 TGIF TG-interacting factor (TALE family homeobox) 18p11.3 4.9 L W 
Leucine       
 Hs.158205 BLZF1 Basic leucine zipper nuclear factor 1(JEM-1) 1q24 3.4 L PC 
Non-POU       
 Hs.172207 NONO Non-POU domain-containing, octamer-binding Xq13.1 19.5 I W 
Nuclear       
 Hs.249247 FBRNP Heterogeneous nuclear protein similar to rat helix destabilizing protein 10 31.4 H PC 
Oncogene       
 Hs.858 RELB v-rel avian reticuloendotheliosis viral oncogene homolog B (nuclear factor of κ light polypeptide gene enhancer in B-cells 3) 19q13.2 260.5 VH W  
 Hs.75569 RELA v-rel avian reticuloendotheliosis viral oncogene homolog A (nuclear factor of κ light polypeptide gene enhancer in B-cells 3 [p65]) 11q13 143.6 VH W  
 Hs.198951 JUNB jun B proto-oncogene 19p13.2 56.9 H W 
 Hs.78465 JUN v-jun avian sarcoma virus 17 oncogene homolog 1p32-p31 47.2 H W  
 Hs.300592 MYBL1 v-myb avian myeloblastosis viral oncogene homolog–like 1 8q22 43.0 H W  
 Hs.51305 MAFF v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein F 22q13.1 36.4 H PC  
 Hs.2780 JUND jun D proto-oncogene 19p13.2 20.8 I W 
 *Hs.79070 MYC v-myc avian myelocytomatosis viral oncogene homolog 8q24.12-q24.13 18.3 I W 
 Hs.85146 ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2 21q22.2 11.0 I W 
 Hs.179718 MYBL2 v-myb avian myeloblastosis viral oncogene homolog–like 2 20q13.1 9.5 L W 
 Hs.92137 MYCL1 v-myc avian myelocytomatosis viral oncogene homolog 1, lung carcinoma derived 1p34.3 8.1 L W 
 Hs.724 THRA Thyroid hormone receptor, α (avian erythroblastic leukemia viral [v-erb-a] oncogene homolog) 17q11.2 6.2 L W  
 Hs.2969 SKI v-ski avian sarcoma viral oncogene homolog 1q22-q24 5.3 L W 
 Hs.110713 DEK DEK oncogene (DNA binding) 6p23 4.9 L W 
 *Hs.157441 SPI1 Spleen focus-forming virus (SFFV) proviral integration oncogene spi1 11p11.2 4.5 L W 
 Hs.181128 ELK1 ELK1, member of ETS oncogene family Xp11.2 4.4 L W  
 Hs.431 BMI1 Murine leukemia viral (bmi-1) oncogene homolog 10p13 4.0 L W 
 Hs.1334 MYB v-myb avian myeloblastosis viral oncogene homolog 6q22-q23 3.7 L W  
 Hs.252229 MAFG v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein G 17q25 3.5 L W  
 Hs.30250 MAF v-maf musculoaponeurotic fibrosarcoma (avian) oncogene homolog 16q22-q23 3.1 L W 
PHD       
 Hs.166204 PHF1 PHD finger protein 1 6p21.3 7.2 L PC 
Repressor       
 Hs.144904 NCOR1 Nuclear receptor corepressor 1 17p11.2 21.2 I W 
 Hs.89421 CIR CBF1 interacting corepressor 2p23.3-q24.3 6.7 L W 
 Hs.7222 RBAK RB-associated KRAB repressor 7 6.0 L PC  
 Hs.5710 CREG Cellular repressor of E1A-stimulated genes 1q24 5.1 L PC 
 Hs.287994 NCOR2 Nuclear receptor corepressor 2 12q24 3.7 L W 
Ring       
 *Hs.14084 RNF7 Ring finger protein 7 3q22-q24 401.9 VH PC 
 Hs.216354 RNF5 Ring finger protein 5 6p21.3 396.4 VH N  
 Hs.97176 RNF25 Ring finger protein 25 2p23.3-q34 358.7 VH N 
 Hs.59545 RNF15 Ring finger protein 15 6p21.3 220.9 VH N  
 Hs.8834 RNF3 Ring finger protein 3 4p16.3 58.4 H N 
 Hs.23794 CHFR Checkpoint with forkhead and ring finger domains 12 42.1 H PC  
 Hs.32597 RNF6 Ring finger protein (C3H2C3 type) 6 13q12.2 31.5 H N 
 *Hs.6900 RNF13 Ring finger protein 13 3p13-q26.1 10.4 I N  
 Hs.61515  H sapiens, similar to ring finger protein 23, clone MGC:2475, mRNA, complete cds N/A 6.4 L N  
 Hs.7838 MKRN1 Makorin, ring finger protein, 1 7q34 5.9 L PC 
 Hs.35384 RING1 Ring finger protein 1 6p21.3 4.4 L W  
 Hs.274295 RNF9 Ring finger protein 9 6p21.3 4.3 L PC  
 Hs.59106 CGR19 Cell growth regulatory with ring finger domain 14q21.1-q23.3 4.2 L N  
 Hs.91096 RNF Ring finger protein 6p21.3 4.0 L N 
Others       
 Hs.326876 SOX6 H sapiens SOX6 mRNA, complete cds 11p15.3 98.2 H W 
 Hs.185708 EBF Early B-cell factor 5q34 81.8 H W 
 Hs.288697 MGC11349 Hypothetical protein MGC11349 3p13-q26.1 12.2 I N  
 Hs.23240  H sapiens cDNA: FLJ21848 fis, clone HEP01925 N/A 11.6 I N  
 Hs.278270 P23 Unactive progesterone receptor, 23 kD 12 5.7 L PC 
 Hs.7367  H sapiens BTB domain protein (BDPL) mRNA, partial cds N/A 4.3 L PC 
UniGene cluster IDGene nameGene descriptionBandFBAbundanceCharacterization
Transcription       
 Hs.321677 STAT3 Signal transducer and activator of transcription 3 (acute-phase response factor) 17q21 437.5 VH W 
 Hs.78881 MEF2B MADS box transcription enhancer factor 2, polypeptide B (myocyte enhancer factor 2B) 19p12 432.8 VH W 
 Hs.96055 E2F1 E2F transcription factor 1 20q11.2 224.9 VH W 
 *Hs.192861 SPIB Spi-B transcription factor (Spi-1/PU.1 related) 19q13.3-q13.4 207.0 VH W 
 Hs.22302 GTF3C4 General transcription factor IIIC, polypeptide 4 (90 kd) 9 200.8 VH W 
 Hs.74861 PC4 Activated RNA polymerase II transcription cofactor 4 8 151.9 VH W 
 Hs.3005 TFAP4 Transcription factor AP-4 (activating enhancer-binding protein 4) 16p13 146.9 VH W 
 Hs.79353 TFDP1 Transcription factor Dp-1 13q34 144.2 VH W  
 Hs.2815 POU6F1 POU domain, class 6, transcription factor 1 12 138.6 VH PC 
 Hs.19131 TFDP2 Transcription factor Dp-2 (E2F dimerization partner 2) 3q23 118.5 VH W  
 Hs.158195 HSF2 Heat shock transcription factor 2 6pter-p25.1 110.9 VH W 
 Hs.239720 CNOT2 CCR4-NOT transcription complex, subunit 2 12 99.4 H PC  
 Hs.93748  Homo sapiens clone moderately similar to transcription factor BTF3 N/A 81.7 H N  
 Hs.110103 RRN3 RNA polymerase I transcription factor RRN3 16p12 68.9 H W 
 Hs.334334 TFAP2A Transcription factor AP-2 α (activating enhancer-binding protein 2 alpha) 6p24 63.8 H W 
 Hs.80598 TCEA2 Transcription elongation factor A (SII), 2 N/A 59.4 H W  
 Hs.108106 ICBP90 Transcription factor 19p13.3 54.0 H PC 
 Hs.154970 TFCP2 Transcription factor CP2 12q13 48.0 H W  
 Hs.294101 PBX3 Pre–B-cell leukemia transcription factor 3 9q33-q34 43.1 H PC 
 *Hs.274184 TFE3 Transcription factor binding to IGHM enhancer 3 Xp11.22 40.9 H W 
 Hs.108371 E2F4 E2F transcription factor 4, p107/p130-binding 16q21-q22 40.4 H W 
 Hs.95243 TCEAL1 Transcription elongation factor A (SII)-like 1 Xq22.1 38.8 H W 
 Hs.1706 ISGF3G Interferon-stimulated transcription factor 3, γ (48 kd) 14q11.2 37.9 H W 
 Hs.9754 ATF5 Activating transcription factor 5 19q13.3 34.6 H W  
 Hs.244613 STAT5B Signal transducer and activator of transcription 5B 17q11.2 33.6 H W 
 Hs.169294 TCF7 Transcription factor 7 (T-cell specific, HMG-box) 5q31.1 31.7 H W 
 Hs.249184 TCF19 Transcription factor 19 (SC1) 6p21.3 29.5 H PC 
 Hs.7647 MAZ MYC-associated zinc finger protein (purine-binding transcription factor) 16p11.2 27.3 H W 
 Hs.29417 ZF HCF-binding transcription factor Zhangfei 11q14 24.0 I PC 
 Hs.155313 DATF1 Death-associated transcription factor 1 20 22.3 I PC  
 Hs.182280 MEF2A MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A) 15q26 21.5 I W  
 Hs.26703 CNOT8 CCR4-NOT transcription complex, subunit 8 5q31-q33 21.4 I PC 
 Hs.279818 AF093680 Similar to mouse Glt3 or D malanogaster transcription factor IIB 16q13-q21 21.3 I W  
 Hs.1189 E2F3 E2F transcription factor 3 6p22 21.0 I W 
 Hs.68257 GTF2F1 General transcription factor IIF, polypeptide 1 (74-kD subunit) 19p13.3 19.0 I W 
 Hs.197540 HIF1A Hypoxia-inducible factor 1, α subunit (basic helix-loop-helix transcription factor) 14q21-q24 16.4 I W 
 *Hs.211588 POU4F1 POU domain, class 4, transcription factor 1 13q21.1-q22 15.9 I W 
 *Hs.155321 SRF Serum response factor (c-fos serum response element-binding transcription factor) 6pter-p24.1 15.1 I W 
 Hs.103989 NCYM DNA-binding transcriptional activator 2p24.1 14.9 I W 
 Hs.326198 TCF4 Transcription factor 4 18q21.1 14.7 I W 
 Hs.75133 TCF6L1 Transcription factor 6–like 1 (mitochondrial transcription
factor 1–like) 		7pter-cen 14.2 I W 
 Hs.101025 BTF3 Basic transcription factor 3 5 14.1 I W  
 Hs.166096 ELF3 E74-like factor 3 (ets domain transcription factor, epithelial specific) 1q32.2 13.8 I W  
 Hs.797 NFYA Nuclear transcription factor Y, α 6p21.3 13.7 I W 
 Hs.129914 RUNX1 Runt-related transcription factor 1 (acute myeloid leukemia 1; aml1 oncogene) 21q22.3 13.6 I W 
 Hs.247433 ATF6 Activating transcription factor 6 1q22-q23 13.5 I W  
 Hs.90304 GTF2H3 General transcription factor IIH, polypeptide 3 (34-kd subunit) 12 11.9 I W 
 Hs.78061 TCF21 Transcription factor 21 6pter-qter 11.1 I PC  
 Hs.75113 GTF3A General transcription factor IIIA 13q12.3-q13.1 10.0 I W 
 Hs.93728 PBX2 Pre–B-cell leukemia transcription factor 2 6p21.3 9.8 L W 
 Hs.16697 DR1 Down-regulator of transcription 1, TBP-binding (negative cofactor 2) 1p22.1 9.8 L W 
 Hs.182237 POU2F1 POU domain, class 2, transcription factor 1 1q22-q23 9.7 L W  
 Hs.765 GATA1 GATA-binding protein 1 (globin transcription factor 1) Xp11.23 9.0 L W 
 Hs.101842 ATBF1 AT-binding transcription factor 1 16q22.3-q23.1 8.7 L W 
 Hs.211581 MTF1 Metal-regulatory transcription factor 1 1p33 8.2 L W  
 Hs.173854 PAXIP1L PAX transcription activation domain interacting protein 1 like 7q36 8.2 L N  
 Hs.197764 TITF1 Thyroid transcription factor 1 14q13 8.0 L W 
 Hs.2982 SP4 Sp4 transcription factor 7p15 7.6 L W  
 Hs.59506 DMRT2 Doublesex and mab-3–related transcription factor 2 9p24.3 7.0 L PC 
 Hs.21486 STAT1 Signal transducer and activator of transcription 1, 91 kd 2q32.2 6.9 L W 
 Hs.278589 GTF2I General transcription factor II, i 7q11.23 6.6 L W  
 Hs.121895 RUNX2 Runt-related transcription factor 2 6p21 6.6 L W 
 Hs.460 ATF3 Activating transcription factor 3 1 6.3 L W  
 Hs.268115  ESTs, weakly similar toT08599 probable transcription factor CA150 [H sapiens] N/A 6.3 L N 
 Hs.171626 TCEB1L Transcription elongation factor B (SIII), polypeptide 1–like 5q31 6.1 L W 
 *Hs.1101 POU2F2 POU domain, class 2, transcription factor 2 19 6.1 L W 
 Hs.54780 TTF1 Transcription termination factor, RNA polymerase I 9 5.9 L W 
 *Hs.89781 UBTF Upstream binding transcription factor, RNA polymerase I 17q21.3 5.8 L W 
 *Hs.14963 FACTP140 Chromatin-specific transcription elongation factor, 140-kd subunit 14 5.8 L W 
 Hs.198166 ATF2 Activating transcription factor 2 2q32 5.7 L W  
 Hs.30824 LZTFL1 Leucine zipper transcription factor–like 1 3p21.3 5.5 L N 
 Hs.108300 CNOT3 CCR4-NOT transcription complex, subunit 3 19q13.4 5.3 L W 
 Hs.166017 MITF Microphthalmia-associated transcription factor 3p14.1-p12.3 5.0 L W 
 Hs.181243 ATF4 Activating transcription factor 4 (tax-responsive enhancer element B67) 22q13.1 4.9 L W 
 Hs.2331 E2F5 E2F transcription factor 5, p130-binding 8p22 4.9 L W 
 Hs.173638 TCF7L2 Transcription factor 7–like 2 (T-cell specific, HMG-box) 10q25.3 4.9 L W 
 Hs.24572  ESTs, weakly similar to TC17_human transcription
factor 17 [H sapiens] 		N/A 4.8 L N 
 Hs.191356 GTF2H2 General transcription factor IIH, polypeptide 2 (44-kd subunit) 5q12.2-q13.3 4.6 L W 
 *Hs.78869 TCEA1 Transcription elongation factor A (SII), 1 3p22-p21.3 4.6 L W 
 Hs.170019 RUNX3 Runt-related transcription factor 3 1p36 4.4 L W  
 Hs.154276 BACH1 BTB and CNC homology 1, basic leucine zipper transcription factor 1 21q22.11 4.4 L W  
 Hs.184771 NFIC Nuclear factor I/C (CCAAT-binding transcription factor) 19p13.3 4.4 L W  
 Hs.89578 GTF2H1 General transcription factor IIH, polypeptide 1 (62-kd subunit) 11p15.1-p14 4.3 L W 
 Hs.227630 REST RE1-silencing transcription factor 4q12-q13.3 4.3 L W 
 Hs.21704 TCF12 Transcription factor 12 (HTF4,helix-loop-helix transcription factors 4) 15q21 4.3 L PC 
 Hs.226318 CNOT7 CCR4-NOT transcription complex, subunit 7 8p22-p21.3 4.1 L PC 
 *Hs.13063 CA150 Transcription factor CA150 5q31 4.1 L W  
 Hs.150557 BTEB1 Basic transcription element binding protein 1 9q13 4.1 L W 
 Hs.84928 NFYB Nuclear transcription factor Y, β 12q22-q23 4.1 L W  
 Hs.35841 NFIX Nuclear factor I/X (CCAAT-binding transcription factor) 19p13.3 4.0 L PC 
 Hs.151139 ELF4 E74-like factor 4 (ets domain transcription factor) Xq26 3.9 L W  
 Hs.78995 MEF2C MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C) 5q14 3.9 L W  
 Hs.97996 MTERF Transcription termination factor, mitochondrial 7q21-q22 3.9 L W 
 Hs.119018 NRF Transcription factorNRF Xp21.1-q25 3.8 L W 
 Hs.100932 TCF17 Transcription factor 17 5q35.3 3.5 L PC  
 Hs.92282 PITX2 Pairedlike homeodomain transcription factor 2 4q25-q27 3.4 L PC 
 Hs.169853 TCF2 Transcription factor 2, hepatic; LF-B3; variant hepatic nuclear factor 17cen-q21.3 3.4 L W 
 Hs.181015 STAT6 Signal transducer and activator of transcription 6, interleukin-4 induced 12q13 3.3 L W 
 Hs.97624 HSF2BP Heat shock transcription factor 2 binding protein 21q22.3 3.2 L PC 
 Hs.171185 P38IP Transcription factor (p38 interacting protein) 13q12.213q14.2 3.2 L N 
 Hs.184693 TCEB1 Transcription elongation factor B (SIII), polypeptide 1 (15 kd, elongin C) 8 3.1 L W 
 Hs.20423 CNOT4 CCR4-NOT transcription complex, subunit 4 7q22-qter 3.1 L PC  
 Hs.76362 GTF2A2 General transcription factor IIA, 2 (12-kd subunit) 15q11.2 3.1 L W 
 *Hs.2430 TCFL1 Transcription factor–like 1 1q21 3.0 L PC  
 Hs.166 SREBF1 Sterol regulatory element binding transcription factor 1 17p11.2 3.0 L W 
Zinc       
 *Hs.194688 BAZ1B Bromodomain adjacent to zinc finger domain, 1B 7q11.23 439.3 VH PC 
 Hs.150390 ZNF262 Zinc finger protein 262 1p32-p34 369.5 VH N  
 Hs.1148 ZFP Zinc finger protein 3p22.3-p21.1 244.4 VH N 
 Hs.301637 ZNF258 Zinc finger protein 258 14q12 231.9 VH N  
 Hs.6557 ZNF161 Zinc finger protein 161 3q26.2 139.7 VH PC 
 Hs.108139 ZNF212 Zinc finger protein 212 7q36.1 118.5 VH N  
 Hs.169832 ZNF42 Zinc finger protein 42 (myeloid-specific retinoic acid–responsive) 19q13.2-q13.4 117.3 VH W 
 Hs.277401 BAZ2A Bromodomain adjacent to zinc finger domain, 2A 12q24.3-qter 108.3 VH N 
 Hs.151689 ZNF137 Zinc finger protein 137 (clone pHZ-30) 19q13.4 107.3 VH N  
 Hs.96448 ZNF193 Zinc finger protein 193 6p21.3 105.2 VH N 
 *Hs.58167 ZNF282 Zinc finger protein 282 7q35-q36 98.4 H PC  
 Hs.3057 ZNF74 Zinc finger protein 74 (Cos52) 22q11.21 88.8 H PC 
 Hs.70617 ZNF33A Zinc finger protein 33a (KOX 31) 10p11.2 78.6 H N 
 Hs.165983 FLJ22504 Hypothetical C2H2 zinc finger protein FLJ22504 20q11.21q13.12 62.6 H N 
 Hs.27801 ZNF278 Zinc finger protein 278 22q12.2 57.8 H W  
 Hs.194718 ZNF265 Zinc finger protein 265 1p31 57.2 H PC 
 Hs.142634 AF020591 Zinc finger protein 19 50.6 H N  
 Hs.183593 ZNF24 Zinc finger protein 24 (KOX 17) 18q12 46.1 H PC 
 Hs.180677 ZNF162 Zinc finger protein 162 11q13 46.0 H W  
 Hs.288773 ZNF294 Zinc finger protein 294 21q22.11 40.8 H N 
 Hs.22879 LOC51193 Zinc finger protein ANC_2H01 3q25.1-q25.33 39.5 H N 
 Hs.13128 ZNF205 Zinc finger protein 205 16p13.3 35.9 H N  
 Hs.182528 ZNF263 Zinc finger protein 263 16 35.4 H PC 
 Hs.119014 ZNF175 Zinc finger protein 175 19q13.4 29.9 H N  
 Hs.117077 ZNF264 Zinc finger protein 264 19q13.4 27.4 H N 
 *Hs.82210 ZNF220 Zinc finger protein 220 8p11 24.5 I PC  
 Hs.12940 ZHX1 Zinc-fingers and homeoboxes 1 8q 24.0 I PC 
 Hs.8383 BAZ2B Bromodomain adjacent to zinc finger domain, 2B 2q23-q24 22.5 I N  
 Hs.288658 ZNF35 Zinc finger protein 35 (clone HF.10) 3p22-p21 22.1 I PC 
 Hs.132390 ZNF36 Zinc finger protein 36 (KOX 18) 7q21.3-q22.1 21.4 I N 
 Hs.7137 LOC57862 Clones 23667 and 23775 zinc finger protein 14q24.3 20.3 I N  
 Hs.110839 ZFP95 Zinc finger protein homologous to Zfp95 in mouse 7q22 15.5 I N 
 Hs.10590 ZNF313 Zinc finger protein 313 20q11.21q11.23 15.1 I N  
 Hs.86356  EST, weakly similar to Z117_human zinc finger
protein 117 [H sapiens] 		N/A 14.3 I N 
 Hs.48589 ZNF228 Zinc finger protein 228 19q13.2 14.1 I N  
 Hs.50216 ZFD25 Zinc finger protein (ZFD25) 7q11.2 12.5 I N 
 Hs.301819 ZNF146 Zinc finger protein 146 19q13.1 10.9 I PC  
 Hs.74107 ZNF43 Zinc finger protein 43 (HTF6) 19p13.1-p12 10.6 I PC 
 Hs.33532 ZNF151 Zinc finger protein 151(pHZ-67) 1p36.2-p36.1 10.4 I W 
 Hs.20047 ZNFN2A1 Zinc finger protein, subfamily 2A (FYVE domain containing), 1 14q22-q24 10.4 I N 
 Hs.289104 ABP/ZF Alu-binding protein with zinc finger domain 7 10.3 I N  
 Hs.57419 CTCF CCCTC-binding factor (zinc finger protein) 16q21-q22.3 9.9 L W 
 *Hs.2110 ZNF9 Zinc finger protein 9 (a cellular retroviral nucleic acid binding protein) 3q13.3-q24 9.8 L PC  
 Hs.93005 SLUG Slug (chicken homolog), zinc finger protein 8q11 9.8 L W 
 *Hs.158174 ZNF184 Zinc finger protein 184 (Kruppel-like) 6p21.3 9.8 L N 
 Hs.59757 ZNF281 Zinc finger protein 281 1q32.1 9.7 L PC 
 *Hs.15220 ZFP106 Zinc finger protein 106 15 9.6 L N  
 Hs.237786 ZNF187 Zinc finger protein 187 6p22 8.9 L PC  
 Hs.62112 ZNF207 Zinc finger protein 207 17 8.8 L N 
 Hs.270435 FLJ12985 Hypothetical protein FLJ12985, human zinc finger
protein 91 		19q12 8.7 L N 
 Hs.89732 ZNF273 Zinc finger protein 273 N/A 8.4 L N  
 Hs.29159 ZNF75 Zinc finger protein 75 (D8C6) Xq26 8.0 L N 
 Hs.24125 LOC51780 Putative zinc finger protein 5q31 7.8 L PC 
 Hs.301059 FLJ12488 Hypothetical protein FLJ12488, moderately human zinc
finger protein 93 		N/A 7.5 L N  
 Hs.19585 SZF1 KRAB-zinc finger protein SZF1-1 3p21 7.2 L PC 
 Hs.154095 ZNF143 Zinc finger protein 143 (clone pHZ-1) 11p15.4 7.1 L PC 
 *Hs.30503  H sapiens cDNA FLJ11344 fis, clone PLACE1010870, moderately similar to zinc finger protein 91 N/A 7.0 L N 
 Hs.9786 ZNF275 Zinc finger protein 275 N/A 6.7 L N  
 Hs.3053 ZID Zinc finger protein with interaction domain 9q33.1-q33.3 6.3 L PC 
 Hs.20631 PEGASUS Zinc finger protein, subfamily 1A, 5 (Pegasus) 10q26 6.0 L PC  
 Hs.20082 ZNF3 Zinc finger protein 3 (A8-51) 5 5.9 L N 
 *Hs.108642 ZNF22 Zinc finger protein 22(KOX 15) 10q11 5.5 L N 
 Hs.78743 ZNF131 Zinc finger protein 131 (clone pHZ-10) 5p12-p11 5.5 L N  
 Hs.29222 ZNF76 Zinc finger protein 76 (expressed in testis) 6p21.3-p21.2 5.4 L PC 
 *Hs.287331 ZNF286 Zinc finger proteinZNF286 17p11.2 5.3 L N 
 *Hs.69997 ZNF238 Zinc finger protein 238 1q44-qter 5.3 L PC  
 Hs.109526 ZNF198 Zinc finger protein 198 13q11-q12 5.3 L PC 
 Hs.85505  ESTs, weakly similar toZF37_human zinc finger
proteinZFP-37 [H sapiens] 		N/A 5.3 L N  
 Hs.48029 SNAI1 Snail 1 (Drosophila homolog), zinc finger protein 20q13.1-q13.2 5.1 L PC 
 Hs.172979 ZNF177 Zinc finger protein 177 19pter-19p13.3 4.8 L PC 
 Hs.155204 ZNF174 Zinc finger protein 174 16p13.3 4.8 L PC  
 Hs.86371 ZNF254 Zinc finger protein 254 19p13.12-p13.11 4.8 L N 
 Hs.180248 ZNF124 Zinc finger protein 124(HZF-16) 1q44 4.6 L PC 
 Hs.279914 ZNF232 Zinc finger protein 232 17p13-p12 4.6 L PC  
 Hs.15110 ZNF211 Zinc finger protein 211 19q13.4 4.3 L N 
 Hs.55481 ZNF165 Zinc finger protein 165 6p21.3 4.3 L N  
 Hs.33268  H sapiens weakly similar to zinc finger protein 84 N/A 4.2 L N  
 Hs.197219 ZNF14 Zinc finger protein 14 (KOX 6) 19p13.3-p13.2 4.2 L N 
 Hs.296365 ZF5128 Zinc finger protein 19 4.1 L N 
 Hs.22182 ZNF23 Zinc finger protein 23 (KOX 16) 16q22 4.1 L N  
 Hs.183291 ZNF268 Zinc finger protein 268 5 4.0 L N 
 Hs.156000 ZFP161 Zinc finger protein homologous toZfp161 in mouse 18pter-p11.2 4.0 L N 
 Hs.72318  H sapiens moderately similar to zinc finger protein 91 N/A 4.0 L N 
 Hs.64794 ZNF183 Zinc finger protein 183 (RING finger, C3HC4 type) Xq25-q26 4.0 L N 
 *Hs.110956 ZNF20 Zinc finger protein 20(KOX 13) 19p13.3-p13.2 4.0 L PC 
 Hs.184669 ZNF144 Zinc finger protein 144(Mel-18) 17 3.7 L W 
 Hs.23476 CIZ1 Cip1-interacting zinc finger protein 9q34.1 3.4 L PC  
 Hs.31324 ZNF155 Zinc finger protein 155(pHZ-96) 19q13.2-q13.32 3.2 L N 
 Hs.23019 ZNF16 Zinc finger protein 16 (KOX 9) 8q24 3.1 L N  
 Hs.88219 ZNF200 Zinc finger protein 200 16p13.3 3.1 L N 
Activator       
 Hs.146847 TANK TRAF family member-associated NFKB activator 2q24-q31 84.0 H W 
 Hs.40403 CITED1 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 1 Xq13.1 37.8 H W 
 Hs.198468 PPARGC1 Peroxisome proliferative activated receptor, γ, coactivator 1 4p15.1 13.7 I W 
 Hs.82071 CITED2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 6q23.3 12.3 I W 
 Hs.3076 MHC2TA MHC class II transactivator 16p13 10.0 I W 
 Hs.283689 ACT Activator of CREM in testis 6q16.1-q16.3 3.9 L W 
 Hs.79093 p100 EBNA-2 coactivator (100 kd) 7q31.3 3.0 L PC 
Enhancer       
 Hs.83958 TLE4 Transducinlike enhancer of split 4, homolog of DrosophilaE(sp1) 9 721.5 VH W  
 Hs.226573 IKBKB Inhibitor of κ light polypeptide gene enhancer in B-cells, kinase β 8p11.2 106.5 VH W 
 Hs.28935 TLE1 Transducinlike enhancer of split 1, homolog of Drosophila E(sp1) 19p13.3 58.4 H W 
 *Hs.75117 ILF2 Interleukin enhancer binding factor 2, 45 kd N/A 52.4 H W 
 Hs.234434 HEY1 Hairy/enhancer-of-split related with YRPW motif 1 8q21 29.9 H PC  
 Hs.81328 NFKBIA Nuclear factor of κ light polypeptide gene enhancer in B cells inhibitor, α 14q13 23.2 I W 
 Hs.332173 TLE2 Transducinlike enhancer of split 2, homolog of Drosophila E(sp1) 19p13.3 18.8 I W 
 Hs.99029 CEBPB CCAAT/enhancer binding protein(C/EBP), β 20q13.1 11.1 I W 
 Hs.256583 ILF3 Interleukin enhancer binding factor 3, 90 kd 19p13 10.0 I PC 
 *Hs.83428 NFKB1 Nuclear factor of κ light polypeptide gene enhancer in B cells 1 (p105) 4q24 9.7 L W 
 Hs.2227 CEBPG CCAAT/enhancer binding protein (C/EBP), γ 19 5.9 L W  
 Hs.9731 NFKBIB Nuclear factor of κ light polypeptide gene enhancer in B-cells inhibitor, β 19q13.1 4.6 L W  
 Hs.306 HIVEP1 Human immunodeficiency virus type I enhancer-binding protein 1 6p24-p22.3 3.8 L W 
 Hs.76722 CEBPD CCAAT/enhancer binding protein(C/EBP), δ 8p11.2-p11.1 3.8 L W 
Forkhead       
 Hs.44481 FOXF2 Forkhead box F2 6p25.3 151.3 VH PC 
 Hs.2714 FOXG1B Forkhead box G1B 14q12-q13 67.9 H W  
 Hs.56213  ESTs, highly similar to FXD3_human forkhead box
protein D3 [H sapiens] 		N/A 55.0 H N 
 Hs.239 FOXM1 Forkhead box M1 12p13 25.9 H W 
 Hs.155591 FOXF1 Forkhead box F1 16q24 21.8 I PC 
 Hs.112968 FOXE3 Forkhead box E3 1p32 7.9 L PC 
 Hs.284186 FOXC1 Forkhead box C1 6p25 6.3 L PC 
 *Hs.170133 FOXO1A Forkhead box O1A (rhabdomyosarcoma) 13q14.1 5.7 L PC 
 Hs.96028 FOXD1 Forkhead box D1 5q12-q13 4.5 L PC 
 Hs.120844 LOC55810 FOXJ2 forkhead factor 12pter-p13.31 4.1 L PC 
 Hs.93974 FOXJ1 Forkhead box J1 17q22-17q25 3.3 L PC 
Helix       
 Hs.76884 ID3 Inhibitor of DNA binding 3, dominant negative helix-loop-helix protein 1p36.13-p36.12 30.8 H W 
 Hs.198998 CHUK Conserved helix-loop-helix ubiquitous kinase 10q24-q25 10 I W  
 Hs.30956 NHLH1 Nescient helix loop helix 1 1q22 8.2 L W 
 *Hs.34853 ID4 Inhibitor of DNA binding 4, dominant negative helix-loop-helix protein 6p22-p21 3.7 L W 
 Hs.46296 NHLH2 Nescient helix loop helix 2 1p12-p11 3.6 L PC  
 Hs.75424 ID1 Inhibitor of DNA binding 1, dominant negative helix-loop-helix protein 20q11 3.3 L W 
Homeobox       
 Hs.55967 SHOX2 Sort stature homeobox 2 3q25-q26.1 220.3 VH PC 
 Hs.125231 HPX42B Hemopoietic progenitor homeobox 10q26 6.3 L PC 
 *Hs.90077 TGIF TG-interacting factor (TALE family homeobox) 18p11.3 4.9 L W 
Leucine       
 Hs.158205 BLZF1 Basic leucine zipper nuclear factor 1(JEM-1) 1q24 3.4 L PC 
Non-POU       
 Hs.172207 NONO Non-POU domain-containing, octamer-binding Xq13.1 19.5 I W 
Nuclear       
 Hs.249247 FBRNP Heterogeneous nuclear protein similar to rat helix destabilizing protein 10 31.4 H PC 
Oncogene       
 Hs.858 RELB v-rel avian reticuloendotheliosis viral oncogene homolog B (nuclear factor of κ light polypeptide gene enhancer in B-cells 3) 19q13.2 260.5 VH W  
 Hs.75569 RELA v-rel avian reticuloendotheliosis viral oncogene homolog A (nuclear factor of κ light polypeptide gene enhancer in B-cells 3 [p65]) 11q13 143.6 VH W  
 Hs.198951 JUNB jun B proto-oncogene 19p13.2 56.9 H W 
 Hs.78465 JUN v-jun avian sarcoma virus 17 oncogene homolog 1p32-p31 47.2 H W  
 Hs.300592 MYBL1 v-myb avian myeloblastosis viral oncogene homolog–like 1 8q22 43.0 H W  
 Hs.51305 MAFF v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein F 22q13.1 36.4 H PC  
 Hs.2780 JUND jun D proto-oncogene 19p13.2 20.8 I W 
 *Hs.79070 MYC v-myc avian myelocytomatosis viral oncogene homolog 8q24.12-q24.13 18.3 I W 
 Hs.85146 ETS2 v-ets avian erythroblastosis virus E26 oncogene homolog 2 21q22.2 11.0 I W 
 Hs.179718 MYBL2 v-myb avian myeloblastosis viral oncogene homolog–like 2 20q13.1 9.5 L W 
 Hs.92137 MYCL1 v-myc avian myelocytomatosis viral oncogene homolog 1, lung carcinoma derived 1p34.3 8.1 L W 
 Hs.724 THRA Thyroid hormone receptor, α (avian erythroblastic leukemia viral [v-erb-a] oncogene homolog) 17q11.2 6.2 L W  
 Hs.2969 SKI v-ski avian sarcoma viral oncogene homolog 1q22-q24 5.3 L W 
 Hs.110713 DEK DEK oncogene (DNA binding) 6p23 4.9 L W 
 *Hs.157441 SPI1 Spleen focus-forming virus (SFFV) proviral integration oncogene spi1 11p11.2 4.5 L W 
 Hs.181128 ELK1 ELK1, member of ETS oncogene family Xp11.2 4.4 L W  
 Hs.431 BMI1 Murine leukemia viral (bmi-1) oncogene homolog 10p13 4.0 L W 
 Hs.1334 MYB v-myb avian myeloblastosis viral oncogene homolog 6q22-q23 3.7 L W  
 Hs.252229 MAFG v-maf musculoaponeurotic fibrosarcoma (avian) oncogene family, protein G 17q25 3.5 L W  
 Hs.30250 MAF v-maf musculoaponeurotic fibrosarcoma (avian) oncogene homolog 16q22-q23 3.1 L W 
PHD       
 Hs.166204 PHF1 PHD finger protein 1 6p21.3 7.2 L PC 
Repressor       
 Hs.144904 NCOR1 Nuclear receptor corepressor 1 17p11.2 21.2 I W 
 Hs.89421 CIR CBF1 interacting corepressor 2p23.3-q24.3 6.7 L W 
 Hs.7222 RBAK RB-associated KRAB repressor 7 6.0 L PC  
 Hs.5710 CREG Cellular repressor of E1A-stimulated genes 1q24 5.1 L PC 
 Hs.287994 NCOR2 Nuclear receptor corepressor 2 12q24 3.7 L W 
Ring       
 *Hs.14084 RNF7 Ring finger protein 7 3q22-q24 401.9 VH PC 
 Hs.216354 RNF5 Ring finger protein 5 6p21.3 396.4 VH N  
 Hs.97176 RNF25 Ring finger protein 25 2p23.3-q34 358.7 VH N 
 Hs.59545 RNF15 Ring finger protein 15 6p21.3 220.9 VH N  
 Hs.8834 RNF3 Ring finger protein 3 4p16.3 58.4 H N 
 Hs.23794 CHFR Checkpoint with forkhead and ring finger domains 12 42.1 H PC  
 Hs.32597 RNF6 Ring finger protein (C3H2C3 type) 6 13q12.2 31.5 H N 
 *Hs.6900 RNF13 Ring finger protein 13 3p13-q26.1 10.4 I N  
 Hs.61515  H sapiens, similar to ring finger protein 23, clone MGC:2475, mRNA, complete cds N/A 6.4 L N  
 Hs.7838 MKRN1 Makorin, ring finger protein, 1 7q34 5.9 L PC 
 Hs.35384 RING1 Ring finger protein 1 6p21.3 4.4 L W  
 Hs.274295 RNF9 Ring finger protein 9 6p21.3 4.3 L PC  
 Hs.59106 CGR19 Cell growth regulatory with ring finger domain 14q21.1-q23.3 4.2 L N  
 Hs.91096 RNF Ring finger protein 6p21.3 4.0 L N 
Others       
 Hs.326876 SOX6 H sapiens SOX6 mRNA, complete cds 11p15.3 98.2 H W 
 Hs.185708 EBF Early B-cell factor 5q34 81.8 H W 
 Hs.288697 MGC11349 Hypothetical protein MGC11349 3p13-q26.1 12.2 I N  
 Hs.23240  H sapiens cDNA: FLJ21848 fis, clone HEP01925 N/A 11.6 I N  
 Hs.278270 P23 Unactive progesterone receptor, 23 kD 12 5.7 L PC 
 Hs.7367  H sapiens BTB domain protein (BDPL) mRNA, partial cds N/A 4.3 L PC 

The genes are presented by general category. UniGene cluster identification number (ID), Gene Name, and Gene Description are abstracted from UniGene (build version 135), Band indicates chromosomal band location; FB, level of expression as measured relative to background (fold over background), as reported previously.17 Abundance category is based on the relative expression level over background, using the following definitions: L, low level (≥ 3-fold to < 10-fold over background); I, intermediate level (≥ 10-fold to < 25-fold); H, high level (≥ 25-fold to < 100-fold); and VH, very high level (≥ 100-fold). Characterization is based on a literature search, as described in the text: W, well-characterized; PC, partially characterized; N, novel; N/A, not available. The asterisk (*) indicates genes that were also selected from the murine stem cell database analysis.

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