Table 3. A partial list of genes... | American Society of Hematology

Table 3.

A partial list of genes commonly expressed in both Rh^loLin^−/loSca-1⁺c-kit⁺and Rh^hiLin^−/loSca-1⁺c-kit⁺cells

Name	Clone code	Accession number	Description
Transcription factor
GCN5	BA_RA5B01	AF254441	Mouse histone acetyltransferases
Vezf1	BA_RA1B23	NM_016686	Vascular endothelial zinc finger, high homology with DB1
Ctcf	BA_RA1D45	NM_007794	CCCTC-binding factor, zinc-finger protein
Pit-1	BA_RA2A02	S77417	Pituitary-specific POU-domain transcription factor
Zfp148	BA_RA2B29	NM_011749	Zinc finger protein 148
LIM only 2 (Lmo2)	BA_RA2B65	NM_008505	Hemotopoietic-related transcription factors
MEF2C	BA_RA2C38	NM_002397	MADS/MEF2-family transcription factor
BRX	BA_RA1A21	Y11896	Breast cancer nuclear receptor-binding auxiliary protein
Scmh1	BA_RA2A80	AB03090	Sex comb on midleg homologue protein
Fiz1	BA_RA1D58	NM_011813	Flt3 interacting zinc finger protein 1
Ciz1	BA_RA3D83	NM_012127	p21 (Cip1/Waf1)-interacting zinc finger protein
p53	MSC_RA14D53	AF161020	Cell cycle regulator
TOK-1	BA_RA1D59	XM_005841	Cdk inhibitor; p21 binding protein
Kinase
p38	BA_RA5D64	NM_011951	MAP kinase
Phosphatase
P19	BA_RA1D25	NM_009878	Nonreceptor protein tyrosine phosphatase (PTP)
Nucleic acid binding protein
Translin	BA_RA5C46	X81464	RNA, DNA-binding protein
Cnbp	BA_RA6C69	NM_013493	Cellular nucleic acid binding protein
Srp20	BA_RA1C83	X91656	RNA-binding protein
Nabp	MSC_RA12A01	L12693	Nucleic acid binding protein
Cell growth
P40	BA_RA6C60	NM_011029	A subunit of IL-12
Cyclophilin	MSC_RA13B90	X52803	Secreted growth factor, cyclosporin A–binding protein
Stathmin	BA_RA1C77	J04797	Also called p19, cytosolic phosphoprotein, developmentally regulated
Ptma	MSC_RA14D10	NM_008972	Prothymosin alpha, proliferation-related protein
Protein modification
Cct8	BA_RA6B12	NM_009840	Chaperonin subunit 8 (theta)
Skp1	BA_RA2C21	AF083214	Skp1/Cull 1/F-box protein (SCF) complex protein Skp1
RC7-I	MSC_RA12B73	D21799	Beta-type subgroup of proteasomes
Adhesion
Vinexin	BA_RA5C01	AF064806	Adhesion associated protein, a vinculin-binding protein with multiple SH3 domains
E25B	BA_RA5C53	U76253	Integral membrane protein 2B
Membrane associated
Ramp 2	BA_RA2B94	NM_019444	Receptor-activity modifying protein 2
Ramp 1	BA_RA1C19	NM_016894	Receptor-activity modifying protein 1
TSA-1	MSC_RA12B43	U47737	Thymic shared antigen-1
Vamp5	BA_RA2C71	NM_016872	Vesicle-associated membrane protein 5
Nuclear protein
BRCA2	BA_RA6C10	U89652	Breast cancer susceptibility genes
RING finger protein	MSC_RA15D38	AF022081	Function as a bridging factor and regulate steroid receptor-dependent transcription
PTAC97	BA_RA3B79	D45836	Nuclear pore–targeting complex component of 97kDa
Apoptotic-related protein
Survivin	BA_RA5C63	AF115517	Inhibitor of apoptosis
PCAR	BA_RA6B65	AF174394	Apoptotic-related protein
Naip7	BA_RA6C21	AF242433	Neuronal apoptosis inhibitory protein
Histone related
Nap1l4	BA_RA6C49	NM_008672	A histone chaperonin
H3f3b	BA_RA6C53	NM_008211	H3b histone
Centrosome associated
IB3/5	BA_RA5B13	X79131	Polypeptide attached to centrosomes
Miscellaneous
MNCb-3848	BA_RA6B62	AB041599	Brain cDNA, clone MNCb-3848
Gdi3	BA_RA1A63	NM_008112	GDP dissociation inhibitor 3 (Gdi3)
Septin6	BA_RA1D47	AB023622	A novel member of the structural GTPase subfamily associated with cytokinesis, KIAA0128 is the human counterpart of mouse Septin6; 1 coil
Mtprd	BA_RA2A46	AB008516	Developmentally regulated gene, involved in Down syndrome
Zinc finger protein	BA_RA2D28	D10627	Zinc finger protein
Unr	BA_RA4B25	U40223	Rat unr mRNA for unr protein with unknown function
SNX5	MSC_RA11A92	NM_014426	Sorting nexin 5 (SNX5)
Transgelin	MSC_RA13A39	AF149291	1 calponin homology domain; in thymus
ATPase	MSC_RA15D42	NM_003945	Lysosomal proton pump
BAF57	MSC_RA18A78	AF035263	Mammalian SWI/SNF subunits, critical for chromatin remodeling
Unknown
RP11	BA_RA5D56	AC022766	Unknown function
4F5rel	BA_RA3B25	AF073297	A candidate phenotypic modifier for SMA
EST	MSC_RA16B50	BG354688	Unknown function
Interferon induced	BA_RA5D20	X61381	R. rattus interferon–induced mRNA

Name	Clone code	Accession number	Description
Transcription factor
GCN5	BA_RA5B01	AF254441	Mouse histone acetyltransferases
Vezf1	BA_RA1B23	NM_016686	Vascular endothelial zinc finger, high homology with DB1
Ctcf	BA_RA1D45	NM_007794	CCCTC-binding factor, zinc-finger protein
Pit-1	BA_RA2A02	S77417	Pituitary-specific POU-domain transcription factor
Zfp148	BA_RA2B29	NM_011749	Zinc finger protein 148
LIM only 2 (Lmo2)	BA_RA2B65	NM_008505	Hemotopoietic-related transcription factors
MEF2C	BA_RA2C38	NM_002397	MADS/MEF2-family transcription factor
BRX	BA_RA1A21	Y11896	Breast cancer nuclear receptor-binding auxiliary protein
Scmh1	BA_RA2A80	AB03090	Sex comb on midleg homologue protein
Fiz1	BA_RA1D58	NM_011813	Flt3 interacting zinc finger protein 1
Ciz1	BA_RA3D83	NM_012127	p21 (Cip1/Waf1)-interacting zinc finger protein
p53	MSC_RA14D53	AF161020	Cell cycle regulator
TOK-1	BA_RA1D59	XM_005841	Cdk inhibitor; p21 binding protein
Kinase
p38	BA_RA5D64	NM_011951	MAP kinase
Phosphatase
P19	BA_RA1D25	NM_009878	Nonreceptor protein tyrosine phosphatase (PTP)
Nucleic acid binding protein
Translin	BA_RA5C46	X81464	RNA, DNA-binding protein
Cnbp	BA_RA6C69	NM_013493	Cellular nucleic acid binding protein
Srp20	BA_RA1C83	X91656	RNA-binding protein
Nabp	MSC_RA12A01	L12693	Nucleic acid binding protein
Cell growth
P40	BA_RA6C60	NM_011029	A subunit of IL-12
Cyclophilin	MSC_RA13B90	X52803	Secreted growth factor, cyclosporin A–binding protein
Stathmin	BA_RA1C77	J04797	Also called p19, cytosolic phosphoprotein, developmentally regulated
Ptma	MSC_RA14D10	NM_008972	Prothymosin alpha, proliferation-related protein
Protein modification
Cct8	BA_RA6B12	NM_009840	Chaperonin subunit 8 (theta)
Skp1	BA_RA2C21	AF083214	Skp1/Cull 1/F-box protein (SCF) complex protein Skp1
RC7-I	MSC_RA12B73	D21799	Beta-type subgroup of proteasomes
Adhesion
Vinexin	BA_RA5C01	AF064806	Adhesion associated protein, a vinculin-binding protein with multiple SH3 domains
E25B	BA_RA5C53	U76253	Integral membrane protein 2B
Membrane associated
Ramp 2	BA_RA2B94	NM_019444	Receptor-activity modifying protein 2
Ramp 1	BA_RA1C19	NM_016894	Receptor-activity modifying protein 1
TSA-1	MSC_RA12B43	U47737	Thymic shared antigen-1
Vamp5	BA_RA2C71	NM_016872	Vesicle-associated membrane protein 5
Nuclear protein
BRCA2	BA_RA6C10	U89652	Breast cancer susceptibility genes
RING finger protein	MSC_RA15D38	AF022081	Function as a bridging factor and regulate steroid receptor-dependent transcription
PTAC97	BA_RA3B79	D45836	Nuclear pore–targeting complex component of 97kDa
Apoptotic-related protein
Survivin	BA_RA5C63	AF115517	Inhibitor of apoptosis
PCAR	BA_RA6B65	AF174394	Apoptotic-related protein
Naip7	BA_RA6C21	AF242433	Neuronal apoptosis inhibitory protein
Histone related
Nap1l4	BA_RA6C49	NM_008672	A histone chaperonin
H3f3b	BA_RA6C53	NM_008211	H3b histone
Centrosome associated
IB3/5	BA_RA5B13	X79131	Polypeptide attached to centrosomes
Miscellaneous
MNCb-3848	BA_RA6B62	AB041599	Brain cDNA, clone MNCb-3848
Gdi3	BA_RA1A63	NM_008112	GDP dissociation inhibitor 3 (Gdi3)
Septin6	BA_RA1D47	AB023622	A novel member of the structural GTPase subfamily associated with cytokinesis, KIAA0128 is the human counterpart of mouse Septin6; 1 coil
Mtprd	BA_RA2A46	AB008516	Developmentally regulated gene, involved in Down syndrome
Zinc finger protein	BA_RA2D28	D10627	Zinc finger protein
Unr	BA_RA4B25	U40223	Rat unr mRNA for unr protein with unknown function
SNX5	MSC_RA11A92	NM_014426	Sorting nexin 5 (SNX5)
Transgelin	MSC_RA13A39	AF149291	1 calponin homology domain; in thymus
ATPase	MSC_RA15D42	NM_003945	Lysosomal proton pump
BAF57	MSC_RA18A78	AF035263	Mammalian SWI/SNF subunits, critical for chromatin remodeling
Unknown
RP11	BA_RA5D56	AC022766	Unknown function
4F5rel	BA_RA3B25	AF073297	A candidate phenotypic modifier for SMA
EST	MSC_RA16B50	BG354688	Unknown function
Interferon induced	BA_RA5D20	X61381	R. rattus interferon–induced mRNA

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