Table 2.

Single-cell analysis of Ki67+ and Ki67 cells of 7 progressively transformed germinal centers

PtCellsCells or samples positive in PCR (%)*Cells with mutated rearrangements/cells informative (%)Cells belonging to clonesNo. clones (no. cells/clone)
MutatedUnmutated
Ki67+ 15/80  (19) 7/13  (54) 0/15 0  
 Ki67(3-4 cells/tube) 21/60  (35) 6/14  (43) 0/21 
Ki67+ 39/80  (49) 13/31  (42) 14/39 3 (7/2/2) 2 (2/12-153)  
 Ki67(2-3 cells/tube) 23/50  (46) 6/23  (26) 3/23 2 (2/12-153
Ki67+ 19/50  (38) 9/13  (69) 6/19 1 (6) 0  
 Ki67 (2-3 cells/tube) 24/55  (44) 3/16  (19) 2/24 1 (2) 
Ki67+, PTGC1 22/60  (37) 6/19  (32) 6/22 1 (3) 1 (3)  
 Ki67+, PTGC2 25/80  (31) 14/24  (58) 7/25 2 (4/3) 
Ki67+, PTGC1 32/60  (53) 27/29  (93) 19/32 1 (19) 0  
 Ki67+, PTGC2 30/60  (50) 13/24  (54) 10/30 2 (8/2) 
PtCellsCells or samples positive in PCR (%)*Cells with mutated rearrangements/cells informative (%)Cells belonging to clonesNo. clones (no. cells/clone)
MutatedUnmutated
Ki67+ 15/80  (19) 7/13  (54) 0/15 0  
 Ki67(3-4 cells/tube) 21/60  (35) 6/14  (43) 0/21 
Ki67+ 39/80  (49) 13/31  (42) 14/39 3 (7/2/2) 2 (2/12-153)  
 Ki67(2-3 cells/tube) 23/50  (46) 6/23  (26) 3/23 2 (2/12-153
Ki67+ 19/50  (38) 9/13  (69) 6/19 1 (6) 0  
 Ki67 (2-3 cells/tube) 24/55  (44) 3/16  (19) 2/24 1 (2) 
Ki67+, PTGC1 22/60  (37) 6/19  (32) 6/22 1 (3) 1 (3)  
 Ki67+, PTGC2 25/80  (31) 14/24  (58) 7/25 2 (4/3) 
Ki67+, PTGC1 32/60  (53) 27/29  (93) 19/32 1 (19) 0  
 Ki67+, PTGC2 30/60  (50) 13/24  (54) 10/30 2 (8/2) 

In all patients, 45 to 56 buffer aliquots covering the Ki67-stained sections were taken as negative controls. In patient 2 the same VH 3-23 rearrangement was amplified from one cell and a buffer control. This cell was excluded from further analysis. In each of patients 4 and 5, a single unmutated VH rearrangement unrelated to the rearrangements amplified from micromanipulated cells was amplified. In addition, for all patients, 20 to 24 CD3+cells were micromanipulated from adjacent CD3-stained sections. Eight buffer aliquots taken from each of these sections were always negative. From one CD3+ cell of patient 3, an unmutated Vκ and a unmutated Vλ rearrangement were amplified.

All sequences have been deposited in the EMBL database under accession numbers AJ406595-925, AJ298845-863, and AJ299840-944.

Pt indicates patient, PCR, polymerase chain reaction; PTGC, progressively transformed germinal center.

*

PCR was performed for VH, Vκ, and Vλ gene rearrangements. Cells from which combinations of rearrangements indicative of cellular contamination were obtained (more than 2 rearrangements per locus or combinations of informative unmutated rearrangements with rearrangements mutated more than 5%) were excluded from further analysis (one Ki67+ cell of patient 2; 3 cells of PTGC1 of patient 5; one cell of PTGC2 of patient 5).

Cells from which only unmutated Vκ rearrangements were obtained are uninformative regarding somatic hypermutation.12 13 

Patient 1: 6 of 18 informative rearrangements mutated, obtained from 6 of 14 informative samples. Patient 2: 7 of 40 informative rearrangements mutated, obtained from 6 of 23 informative samples. Patient 3: 3 of 21 informative rearrangements mutated, obtained from 3 of 16 informative samples.

F2-153

From one Ki67+ cell and a Ki67 sample, the same unmutated and potentially functional Vλ 3h rearrangement with 2 N-nucleotides was amplified. These 2 cells likely represent members of a clone, though it cannot be excluded that the 2 cells are clonally unrelated.

Close Modal

or Create an Account

Close Modal
Close Modal