Table 1.

Primers used in the PCR experiments

Primer Sequence (5′ → 3′) Region studied
   8F CCTGCCAGGCCTTGCCAGCC  Promoter  
 539R CGCCGTCCTCCGCCATGGCC  
 520F  GGCCATGGCGGAGGACGGCG Promoter, E1  
 776R  GCCAGACCCCTCCTCGGCGA  
1838F CCAGGGCACTGGTTAGGAAT  E2, E3, E4, I2, I3  
2549R CCTTTTCTGGATCAGCATGG  
2669F  TACTCCGGAGAACCTGGCTG  E5, E6, I5  
3510R  GGAAAGGGCAGTTACTGGGC  
3401F CCGAATTCGTGGACATCATC  E7  
3920R TTATCTGGGCAAGTCCAGTG 
Primer Sequence (5′ → 3′) Region studied
   8F CCTGCCAGGCCTTGCCAGCC  Promoter  
 539R CGCCGTCCTCCGCCATGGCC  
 520F  GGCCATGGCGGAGGACGGCG Promoter, E1  
 776R  GCCAGACCCCTCCTCGGCGA  
1838F CCAGGGCACTGGTTAGGAAT  E2, E3, E4, I2, I3  
2549R CCTTTTCTGGATCAGCATGG  
2669F  TACTCCGGAGAACCTGGCTG  E5, E6, I5  
3510R  GGAAAGGGCAGTTACTGGGC  
3401F CCGAATTCGTGGACATCATC  E7  
3920R TTATCTGGGCAAGTCCAGTG 

All the primers, except one, that were used for PCR amplification and sequencing the human TPI gene are located in introns. Amplification of the promoter region was performed in 2 parts while the exons, intron-exon boundaries, and small adjacent introns were amplified in 4 parts. PCR experiments were performed using AmpliTaq Gold enzyme (Perkin Elmer, Foster City, CA) for 30 cycles at 60°C, except for 8F-539R and 520F-776R at 65°C for 35 cycles and 30 cycles at 55°C for primers 3401F-3920R. Magnesium concentration was adjusted to 1.5 mM except for 3401F-3920R, where it was adjusted to 2 mM.

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