Sequences of clonotypic antigen receptor gene rearrangements
Pts . | IgH . | |||
---|---|---|---|---|
D . | N . | J . | VDJ . | |
1 | gtattacgatattttgactggttattataac | cctcg | aactggttcgacc | VH4-D3-10-J5 |
2 | tagtagtaccagctgctat | tgaggggg | ttggtactactacggtat | VH6-D2-2-J6 |
3 | ataagttcgatagctgctcgc | gactactgggcc | VH1-(?D)-J4 | |
TCRG | ||||
rowV | N | J | VJ | |
4 | ccacctgggac | cgggg | tattataagaaactctttg | TCRGV1S3J1S3 |
5 | ccacctgggatg | agtcttc | ttataagaaactctttggcag | TCRGV1S4J1S3 |
Pts . | IgH . | |||
---|---|---|---|---|
D . | N . | J . | VDJ . | |
1 | gtattacgatattttgactggttattataac | cctcg | aactggttcgacc | VH4-D3-10-J5 |
2 | tagtagtaccagctgctat | tgaggggg | ttggtactactacggtat | VH6-D2-2-J6 |
3 | ataagttcgatagctgctcgc | gactactgggcc | VH1-(?D)-J4 | |
TCRG | ||||
rowV | N | J | VJ | |
4 | ccacctgggac | cgggg | tattataagaaactctttg | TCRGV1S3J1S3 |
5 | ccacctgggatg | agtcttc | ttataagaaactctttggcag | TCRGV1S4J1S3 |
Pts: patients; patients 1 and 2 had a pro-B ALL; patient 3, a common ALL; patients 4 and 5, a T-lineage ALL. They were screened for the presence of preleukemic/leukemic cells in their neonatal blood spots by the use of ASO-PCR. The sequences are subdivided into V (variable), D (diversity), and J (joining) regions. N are the candidate nucleotides for template-independent insertion, D are the residual nucleotides of the D regions, and J the 5′ end of the J regions. The V(D)J combinations are shown. Underlined sequences indicate the position of the leukemia clone-specific primers. In patient 1, the primer was placed into the VD junction (gccagaggagggtagtattacg).