Nonproductive Sequences
| . | TCRβ . | TCRα . |
|---|---|---|
| Case 1 | //BJ2S4/BC2 | AV14S1#AJ55/AC |
| BC1 | AV12S5#AJ54/AC | |
| BD1 5′intron/BC1 | AV2S5#AJ55/AC | |
| //BJ2S5…BJ2S6/BC1 | //AJ49/AC | |
| BC1 exon 4/BC1 exon 1/BC1 | AJ54-AJ53 intron/AC | |
| Case 2 | BV2.1#BJ2.5/BC2 | AV17S2#AJ3/AC |
| …BD1/BJ2S4/BC2 | AV12S1#AJ49/AC | |
| …BD1/BJ1S1/BC1 | AV18S2#AJ32/AC | |
| …BD1/BJ1S5/BC1 | //AJ6/AC | |
| …BD1/BJ1S6/BC1 | //AJ30/AC | |
| …BJ1S5/BC1 | ||
| …BJ2S3/BC2 | ||
| //BJ2S5/BC2 | ||
| //BJ2S2/BC2 | ||
| Case 3 | //BJ2S3/BC2 | AV2S8#AJ49*/AC |
| //AJ45/AC | ||
| //AJ13/AC | ||
| //AJ11/5′ AC intron/AC | ||
| Case 4 | //BD1/BJ1S1/BC1 | AV?#AJ3/AC |
| //BJ2S3/BC2 | AV18S2#AJ18/AC | |
| //BJ2S4/BC2 | AV13S1#AJ29/AC | |
| //BJ2S5/BC2 | AV13.1#AJ55/AC | |
| BC1 intron(exon1-2)/3′ intron/BC1 | AV27.1#AJ3/AC | |
| //BD2/BJ2S5…BJ2S6…BJ2S7/BC2 | AV23.1#AJ29/AC | |
| Case 5 | NONE | AV28.1#AJ49*/AC |
| AV12.1#AJ8/AC | ||
| AV16.1#AJ7/AC | ||
| AV6.1#AJ9/AC | ||
| AV7.4#AJ32/AC | ||
| AV17.1#AJ7/AC | ||
| //AJ30/AC | ||
| //AJ9/AC | ||
| //AC | ||
| Case 6 | …BJ1.5/BC1 | //AJ48/signal seq. .AJ47/AC |
| …BJ1.6/BC1 | …AJ42/AC | |
| //AC | ||
| Case 7 | …BJ2.3/BC2 | AV27.1#AJ58/AC |
| //BJ1.5/BC1 | AV17.2#AJ47/AC | |
| AV14.1#AJ50/AC | ||
| //AJ49/AC | ||
| //AJ43/AC | ||
| …AJ45/AC |
| . | TCRβ . | TCRα . |
|---|---|---|
| Case 1 | //BJ2S4/BC2 | AV14S1#AJ55/AC |
| BC1 | AV12S5#AJ54/AC | |
| BD1 5′intron/BC1 | AV2S5#AJ55/AC | |
| //BJ2S5…BJ2S6/BC1 | //AJ49/AC | |
| BC1 exon 4/BC1 exon 1/BC1 | AJ54-AJ53 intron/AC | |
| Case 2 | BV2.1#BJ2.5/BC2 | AV17S2#AJ3/AC |
| …BD1/BJ2S4/BC2 | AV12S1#AJ49/AC | |
| …BD1/BJ1S1/BC1 | AV18S2#AJ32/AC | |
| …BD1/BJ1S5/BC1 | //AJ6/AC | |
| …BD1/BJ1S6/BC1 | //AJ30/AC | |
| …BJ1S5/BC1 | ||
| …BJ2S3/BC2 | ||
| //BJ2S5/BC2 | ||
| //BJ2S2/BC2 | ||
| Case 3 | //BJ2S3/BC2 | AV2S8#AJ49*/AC |
| //AJ45/AC | ||
| //AJ13/AC | ||
| //AJ11/5′ AC intron/AC | ||
| Case 4 | //BD1/BJ1S1/BC1 | AV?#AJ3/AC |
| //BJ2S3/BC2 | AV18S2#AJ18/AC | |
| //BJ2S4/BC2 | AV13S1#AJ29/AC | |
| //BJ2S5/BC2 | AV13.1#AJ55/AC | |
| BC1 intron(exon1-2)/3′ intron/BC1 | AV27.1#AJ3/AC | |
| //BD2/BJ2S5…BJ2S6…BJ2S7/BC2 | AV23.1#AJ29/AC | |
| Case 5 | NONE | AV28.1#AJ49*/AC |
| AV12.1#AJ8/AC | ||
| AV16.1#AJ7/AC | ||
| AV6.1#AJ9/AC | ||
| AV7.4#AJ32/AC | ||
| AV17.1#AJ7/AC | ||
| //AJ30/AC | ||
| //AJ9/AC | ||
| //AC | ||
| Case 6 | …BJ1.5/BC1 | //AJ48/signal seq. .AJ47/AC |
| …BJ1.6/BC1 | …AJ42/AC | |
| //AC | ||
| Case 7 | …BJ2.3/BC2 | AV27.1#AJ58/AC |
| //BJ1.5/BC1 | AV17.2#AJ47/AC | |
| AV14.1#AJ50/AC | ||
| //AJ49/AC | ||
| //AJ43/AC | ||
| …AJ45/AC |
# Indicates an out-of-frame rearrangement, / indicates a productively recombined or spiced site, // indicates a truncated or “broken” gene segment, … indicates continuation of 5′ germline sequence.