Table 5.

Shared CDR3 Motifs

Motif Case Clone CDR35-150
β1  2  SESKDRGSETQ  
 2  SLDKAGTE
 
α1  1  2  VLGGSNYKL 
 6  VLGGSNYKL 
 
α2  3  6  VNTGNQF 
 7  2  FNTGNQF 
 
α3  6  YRSATGANSKL 
 6  3  YRSVYNTDKL 
Motif Case Clone CDR35-150
β1  2  SESKDRGSETQ  
 2  SLDKAGTE
 
α1  1  2  VLGGSNYKL 
 6  VLGGSNYKL 
 
α2  3  6  VNTGNQF 
 7  2  FNTGNQF 
 
α3  6  YRSATGANSKL 
 6  3  YRSVYNTDKL 
F5-150

Amino acids shown in bold are identical; conservative differences are underlined. Gaps are introduced to maximize line-up of like amino acids. CDR3s were defined as those amino acids beginning at the third (second for α) amino acid 3′ of the terminal 3′ V-region cysteine and ending three nucleotides 5′ of the J-region motif GXG.

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