Primer Pairs and PCR Conditions for Screening of Mutation in H and Se Genes
| . | Name . | Primers (5′-3′) . | Inactivated Allele Detected . | Annealing Temperature . | Fragment Sizes . | Enzyme . |
|---|---|---|---|---|---|---|
| H gene | mk1 | CTCGAATTCCTCAGCCTCAGAGCATTTG EcoRI | (h4) | 60°C | 1,170 bp | — (Eam1105 I) |
| mk2 | CTCAAGCTTCTACTTCAGAAAGTCTCCCTG HindIII | |||||
| mk3 | CTATCTGCAGGTTATGCCTCAGCTCT | h1 | 62°C | 78 bp | Xba I | |
| mk4 | AACCAGTCCATGGCCTGCCGGAGG | |||||
| mk5 | GCAACCACACCATTATGACCATTG | h2 | 62°C | 116 bp | Xho I | |
| mk6 | GATCTTCAGGAACTCAGAGTCTCG | |||||
| mk7 | AAGGGTGTGGTGGGCGACAGGGCC | h3 | 62°C | 101 bp | Apa I | |
| mk8 | TCCATGCCGTTGCTGGTGACCACGA | |||||
| mk9 | TTCACGACTGGATGCGGAGGTG | h5 | 62°C | 126 bp | ApaLI | |
| mk10 | GCAGGGTGAACTCTCTGCGGATC | |||||
| mk11 | AACTTCACCCTGCCAGACTCTGAG | h5 | 62°C | 125 bp | BstXI | |
| mk12 | GGCTCTCAAGGCTTAGCCAATGTC | |||||
| Se gene | tk1 | CTCGAATTCGGGCCTCCATCTCCCAGCTAAC EcoRI | 65°C | 1,170 bp | ||
| tk2 | CTCAAGCTTGCTTCTCATGCCCGGGCACTC HindIII | |||||
| tk5 | CAGGATCCCCTGGCAGAACTACCACATTAA | sej | 65°C | 98 bp | Ase I | |
| tk6 | AGCAGGGGTAGCCGGTGAAGCGGACGTACT | |||||
| tk7 | AACGACTGGATGGAGGAGGAATACCGCAGC | Se2, sej | 65°C | 80 bp | Alu I | |
| tk8 | AAGGTCCAGGAGCAGGGGTAGCCGGTGAAG | |||||
| Le gene | sn1 | CTCGAATTCTAAGCAGGAGATTGTCATCACTGACC EcoRI | 60°C | 1,615 bp | ||
| sn2 | CTCAAGCTTCGTGCCGTGATGATCTCTCTGCAC HindIII | |||||
| sn3 | CCATGGCGCCGCTGTCTGGCCGCCC | le1, le2 | 62°C | 93 bp | Msp I | |
| sn4 | AGTGGCATCGTCTCGGGACACACG | |||||
| sn6 | CGCTCCTTCAGCTGGGCACTGGA | le2 | 60°C | 109 bp | HindIII | |
| sn7 | CGGCCTCTCAGGTGAACCAAGAAGCT | |||||
| sn8 | ACTTGGAGCCACCCCCTAACTGCCA | le1 | 70°C | 206 bp | Pvu II | |
| sn9 | TGAGTCCGGCTTCCAGTTGGACACC |
| . | Name . | Primers (5′-3′) . | Inactivated Allele Detected . | Annealing Temperature . | Fragment Sizes . | Enzyme . |
|---|---|---|---|---|---|---|
| H gene | mk1 | CTCGAATTCCTCAGCCTCAGAGCATTTG EcoRI | (h4) | 60°C | 1,170 bp | — (Eam1105 I) |
| mk2 | CTCAAGCTTCTACTTCAGAAAGTCTCCCTG HindIII | |||||
| mk3 | CTATCTGCAGGTTATGCCTCAGCTCT | h1 | 62°C | 78 bp | Xba I | |
| mk4 | AACCAGTCCATGGCCTGCCGGAGG | |||||
| mk5 | GCAACCACACCATTATGACCATTG | h2 | 62°C | 116 bp | Xho I | |
| mk6 | GATCTTCAGGAACTCAGAGTCTCG | |||||
| mk7 | AAGGGTGTGGTGGGCGACAGGGCC | h3 | 62°C | 101 bp | Apa I | |
| mk8 | TCCATGCCGTTGCTGGTGACCACGA | |||||
| mk9 | TTCACGACTGGATGCGGAGGTG | h5 | 62°C | 126 bp | ApaLI | |
| mk10 | GCAGGGTGAACTCTCTGCGGATC | |||||
| mk11 | AACTTCACCCTGCCAGACTCTGAG | h5 | 62°C | 125 bp | BstXI | |
| mk12 | GGCTCTCAAGGCTTAGCCAATGTC | |||||
| Se gene | tk1 | CTCGAATTCGGGCCTCCATCTCCCAGCTAAC EcoRI | 65°C | 1,170 bp | ||
| tk2 | CTCAAGCTTGCTTCTCATGCCCGGGCACTC HindIII | |||||
| tk5 | CAGGATCCCCTGGCAGAACTACCACATTAA | sej | 65°C | 98 bp | Ase I | |
| tk6 | AGCAGGGGTAGCCGGTGAAGCGGACGTACT | |||||
| tk7 | AACGACTGGATGGAGGAGGAATACCGCAGC | Se2, sej | 65°C | 80 bp | Alu I | |
| tk8 | AAGGTCCAGGAGCAGGGGTAGCCGGTGAAG | |||||
| Le gene | sn1 | CTCGAATTCTAAGCAGGAGATTGTCATCACTGACC EcoRI | 60°C | 1,615 bp | ||
| sn2 | CTCAAGCTTCGTGCCGTGATGATCTCTCTGCAC HindIII | |||||
| sn3 | CCATGGCGCCGCTGTCTGGCCGCCC | le1, le2 | 62°C | 93 bp | Msp I | |
| sn4 | AGTGGCATCGTCTCGGGACACACG | |||||
| sn6 | CGCTCCTTCAGCTGGGCACTGGA | le2 | 60°C | 109 bp | HindIII | |
| sn7 | CGGCCTCTCAGGTGAACCAAGAAGCT | |||||
| sn8 | ACTTGGAGCCACCCCCTAACTGCCA | le1 | 70°C | 206 bp | Pvu II | |
| sn9 | TGAGTCCGGCTTCCAGTTGGACACC |