Table 1.

Correlation of antioxidant enzyme gene expression with prognosis as measured by the patient outcome predictor scores



Average expression on microarray

Statistical significance
Gene
Best prognosis, 10%
Worst prognosis, 10%
t test, best 10% versus worst 10%, P
Regression, all patients, P
Decreasing expression with poor prognosis     
   Mn superoxide dismutase (SOD2)  0.2632   -0.5577   .011*  .000* 
   Extracellular superoxide dismutase (SOD3)  0.1759   -0.6345   .008*  .031* 
   Glutathione peroxidase (GPX1,3,4)  0.1254   -0.1428   .080   .012* 
   Catalase   0.1079   -0.3076   .042*  .191  
No change with prognosis     
   Cu,Zn superoxide dismutase (SOD1)  0.1885   0.1845   .985   .331  
Increasing expression with poor prognosis     
   Peroxiredoxin 3 (PRX3)  -0.0722   0.1009   .173   .040* 
   Peroxiredoxin 4 (PRX4)
 
-0.0365
 
0.3623
 
.068
 
.008*
 


Average expression on microarray

Statistical significance
Gene
Best prognosis, 10%
Worst prognosis, 10%
t test, best 10% versus worst 10%, P
Regression, all patients, P
Decreasing expression with poor prognosis     
   Mn superoxide dismutase (SOD2)  0.2632   -0.5577   .011*  .000* 
   Extracellular superoxide dismutase (SOD3)  0.1759   -0.6345   .008*  .031* 
   Glutathione peroxidase (GPX1,3,4)  0.1254   -0.1428   .080   .012* 
   Catalase   0.1079   -0.3076   .042*  .191  
No change with prognosis     
   Cu,Zn superoxide dismutase (SOD1)  0.1885   0.1845   .985   .331  
Increasing expression with poor prognosis     
   Peroxiredoxin 3 (PRX3)  -0.0722   0.1009   .173   .040* 
   Peroxiredoxin 4 (PRX4)
 
-0.0365
 
0.3623
 
.068
 
.008*
 
*

Significant P value

Values are on a log2 scale

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