Probe sets (transcripts) of the minimal response classifier
| Probe set . | Gene symbol . | Training set fold change . | Training P . | Test set fold change . | β-Catenin target by SACO . |
|---|---|---|---|---|---|
| 225688_s_at | PHLDB2 | 4.197 | .009 | 1.646 | Yes |
| 205848_at | GAS2 | 3.400 | .021 | 2.115 | No |
| 219454_at | EGFL6 | 3.302 | .010 | 1.853 | No |
| 238206_at | — | 2.829 | .011 | 2.290 | No |
| 205612_at | MMRN1 | 2.412 | .012 | 1.862 | Yes |
| 229963_at | NGFRAP1L1 | 2.410 | .038 | 1.802 | No |
| 235342_at | SPOCK3 | 2.337 | .042 | 2.515 | Yes |
| 226003_at | KIF21A | 2.287 | .034 | 1.672 | No |
| 230791_at | — | 2.224 | .021 | 1.551 | No |
| 205609_at | ANGPT1 | 2.129 | .028 | 1.732 | No |
| 223503_at | TMEM163 | 2.098 | .010 | 1.594 | Yes |
| 222885_at | EMCN | 2.095 | .021 | 1.765 | Yes |
| 227314_at | ITGA2 | 2.086 | .004 | 1.489 | Yes |
| 226425_at | CLIP4 | 2.084 | .005 | 1.474 | Yes |
| 205637_s_at | SH3GL3 | 2.013 | .041 | 1.972 | Yes |
| 1562403_a_at | SLC8A3 | 1.979 | .003 | 1.725 | Yes |
| 228396_at | — | 1.940 | .055 | 2.240 | No |
| 228027_at | GPRASP2 | 1.938 | .044 | 1.664 | No |
| 202112_at | VWF | 1.927 | .078 | 3.179 | Yes |
| 1554007_at | — | 1.918 | .011 | 1.562 | No |
| 223669_at | HEMGN | 1.881 | .034 | 1.483 | Yes |
| 229654_at | ZNF44 | 1.875 | .001 | 1.458 | Yes |
| 204069_at | MEIS1 | 1.871 | .003 | 1.360 | Yes |
| 205518_s_at | CMAH | 1.842 | .005 | 1.553 | No |
| 221802_s_at | KIAA1598 | 1.840 | .073 | 2.099 | Yes |
| 1556136_at | RP11–145H9.1 | 1.837 | .011 | 1.607 | Yes |
| 209488_s_at | RBPMS | 1.836 | .061 | 1.855 | Yes |
| 228195_at | MGC13057 | 1.820 | .023 | 1.702 | Yes |
| 213029_at | NFIB | 1.806 | .014 | 1.865 | Yes |
| 203404_at | ARMCX2 | 1.792 | .045 | 1.467 | No |
| 226189_at | ITGB8 | 1.779 | .014 | 1.390 | Yes |
| 209290_s_at | NFIB | 1.746 | .091 | 2.390 | Yes |
| 1552626_a_at | TMEM163 | 1.742 | .015 | 1.442 | Yes |
| 230698_at | — | 1.741 | .064 | 1.678 | No |
| 213306_at | MPDZ | 1.737 | .075 | 1.704 | No |
| 230518_at | EVA1 | 1.711 | .009 | 1.478 | No |
| 207836_s_at | RBPMS | 1.708 | .064 | 1.507 | Yes |
| 210102_at | LOH11CR2A | 1.702 | .034 | 1.487 | Yes |
| 227417_at | MOSC2 | 1.691 | .082 | 1.519 | Yes |
| 204523_at | ZNF140 | 1.688 | .003 | 1.543 | No |
| 230291_s_at | NFIB | 1.672 | .070 | 1.994 | Yes |
| 209459_s_at | ABAT | 1.657 | .036 | 1.504 | Yes |
| 228805_at | C5orf25 | 1.637 | .008 | 1.564 | No |
| 227875_at | KLHL13 | 1.632 | .063 | 1.594 | Yes |
| 217109_at | MUC4 | 1.630 | .084 | 1.482 | Yes |
| 203786_s_at | TPD52L1 | 1.627 | .062 | 1.954 | Yes |
| 205079_s_at | MPDZ | 1.627 | .086 | 1.367 | No |
| 201150_s_at | TIMP3 | 1.616 | .055 | 1.826 | Yes |
| 235227_at | — | 1.609 | .009 | 1.736 | No |
| 242919_at | ZNF253 | 1.602 | .020 | 1.476 | No |
| 212501_at | CEBPB | 0.598 | .037 | 0.459 | No |
| 219505_at | CECR1 | 0.587 | .058 | 0.425 | Yes |
| 202208_s_at | ARL4C | 0.580 | .007 | 0.554 | No |
| 222496_s_at | FLJ20273 | 0.579 | .048 | 0.516 | Yes |
| 202912_at | ADM | 0.549 | .095 | 0.381 | Yes |
| 242397_at | — | 0.549 | .001 | 0.658 | No |
| 205896_at | SLC22A4 | 0.541 | .004 | 0.579 | Yes |
| 1569263_at | — | 0.537 | .010 | 0.445 | No |
| 203234_at | UPP1 | 0.535 | .015 | 0.478 | Yes |
| 200872_at | S100A10 | 0.531 | .004 | 0.611 | Yes |
| 218589_at | P2RY5 | 0.515 | .092 | 0.532 | No |
| 201422_at | IFI30 | 0.494 | .037 | 0.440 | No |
| 221840_at | PTPRE | 0.491 | .025 | 0.386 | Yes |
| 221698_s_at | CLEC7A | 0.480 | .071 | 0.434 | No |
| 211429_s_at | SERPINA1 | 0.446 | .036 | 0.335 | Yes |
| 205653_at | CTSG | 0.445 | .027 | 0.421 | No |
| 202833_s_at | SERPINA1 | 0.441 | .062 | 0.270 | Yes |
| 230748_at | SLC16A6 | 0.439 | .092 | 0.514 | Yes |
| 222670_s_at | MAFB | 0.432 | .020 | 0.567 | No |
| 203948_s_at | MPO | 0.423 | .052 | 0.551 | Yes |
| 202207_at | ARL4C | 0.423 | .072 | 0.319 | No |
| 218454_at | FLJ22662 | 0.405 | .041 | 0.324 | No |
| 204971_at | CSTA | 0.397 | .042 | 0.464 | No |
| 210254_at | MS4A3 | 0.334 | .024 | 0.376 | No |
| 205237_at | FCN1 | 0.324 | .021 | 0.333 | No |
| Probe set . | Gene symbol . | Training set fold change . | Training P . | Test set fold change . | β-Catenin target by SACO . |
|---|---|---|---|---|---|
| 225688_s_at | PHLDB2 | 4.197 | .009 | 1.646 | Yes |
| 205848_at | GAS2 | 3.400 | .021 | 2.115 | No |
| 219454_at | EGFL6 | 3.302 | .010 | 1.853 | No |
| 238206_at | — | 2.829 | .011 | 2.290 | No |
| 205612_at | MMRN1 | 2.412 | .012 | 1.862 | Yes |
| 229963_at | NGFRAP1L1 | 2.410 | .038 | 1.802 | No |
| 235342_at | SPOCK3 | 2.337 | .042 | 2.515 | Yes |
| 226003_at | KIF21A | 2.287 | .034 | 1.672 | No |
| 230791_at | — | 2.224 | .021 | 1.551 | No |
| 205609_at | ANGPT1 | 2.129 | .028 | 1.732 | No |
| 223503_at | TMEM163 | 2.098 | .010 | 1.594 | Yes |
| 222885_at | EMCN | 2.095 | .021 | 1.765 | Yes |
| 227314_at | ITGA2 | 2.086 | .004 | 1.489 | Yes |
| 226425_at | CLIP4 | 2.084 | .005 | 1.474 | Yes |
| 205637_s_at | SH3GL3 | 2.013 | .041 | 1.972 | Yes |
| 1562403_a_at | SLC8A3 | 1.979 | .003 | 1.725 | Yes |
| 228396_at | — | 1.940 | .055 | 2.240 | No |
| 228027_at | GPRASP2 | 1.938 | .044 | 1.664 | No |
| 202112_at | VWF | 1.927 | .078 | 3.179 | Yes |
| 1554007_at | — | 1.918 | .011 | 1.562 | No |
| 223669_at | HEMGN | 1.881 | .034 | 1.483 | Yes |
| 229654_at | ZNF44 | 1.875 | .001 | 1.458 | Yes |
| 204069_at | MEIS1 | 1.871 | .003 | 1.360 | Yes |
| 205518_s_at | CMAH | 1.842 | .005 | 1.553 | No |
| 221802_s_at | KIAA1598 | 1.840 | .073 | 2.099 | Yes |
| 1556136_at | RP11–145H9.1 | 1.837 | .011 | 1.607 | Yes |
| 209488_s_at | RBPMS | 1.836 | .061 | 1.855 | Yes |
| 228195_at | MGC13057 | 1.820 | .023 | 1.702 | Yes |
| 213029_at | NFIB | 1.806 | .014 | 1.865 | Yes |
| 203404_at | ARMCX2 | 1.792 | .045 | 1.467 | No |
| 226189_at | ITGB8 | 1.779 | .014 | 1.390 | Yes |
| 209290_s_at | NFIB | 1.746 | .091 | 2.390 | Yes |
| 1552626_a_at | TMEM163 | 1.742 | .015 | 1.442 | Yes |
| 230698_at | — | 1.741 | .064 | 1.678 | No |
| 213306_at | MPDZ | 1.737 | .075 | 1.704 | No |
| 230518_at | EVA1 | 1.711 | .009 | 1.478 | No |
| 207836_s_at | RBPMS | 1.708 | .064 | 1.507 | Yes |
| 210102_at | LOH11CR2A | 1.702 | .034 | 1.487 | Yes |
| 227417_at | MOSC2 | 1.691 | .082 | 1.519 | Yes |
| 204523_at | ZNF140 | 1.688 | .003 | 1.543 | No |
| 230291_s_at | NFIB | 1.672 | .070 | 1.994 | Yes |
| 209459_s_at | ABAT | 1.657 | .036 | 1.504 | Yes |
| 228805_at | C5orf25 | 1.637 | .008 | 1.564 | No |
| 227875_at | KLHL13 | 1.632 | .063 | 1.594 | Yes |
| 217109_at | MUC4 | 1.630 | .084 | 1.482 | Yes |
| 203786_s_at | TPD52L1 | 1.627 | .062 | 1.954 | Yes |
| 205079_s_at | MPDZ | 1.627 | .086 | 1.367 | No |
| 201150_s_at | TIMP3 | 1.616 | .055 | 1.826 | Yes |
| 235227_at | — | 1.609 | .009 | 1.736 | No |
| 242919_at | ZNF253 | 1.602 | .020 | 1.476 | No |
| 212501_at | CEBPB | 0.598 | .037 | 0.459 | No |
| 219505_at | CECR1 | 0.587 | .058 | 0.425 | Yes |
| 202208_s_at | ARL4C | 0.580 | .007 | 0.554 | No |
| 222496_s_at | FLJ20273 | 0.579 | .048 | 0.516 | Yes |
| 202912_at | ADM | 0.549 | .095 | 0.381 | Yes |
| 242397_at | — | 0.549 | .001 | 0.658 | No |
| 205896_at | SLC22A4 | 0.541 | .004 | 0.579 | Yes |
| 1569263_at | — | 0.537 | .010 | 0.445 | No |
| 203234_at | UPP1 | 0.535 | .015 | 0.478 | Yes |
| 200872_at | S100A10 | 0.531 | .004 | 0.611 | Yes |
| 218589_at | P2RY5 | 0.515 | .092 | 0.532 | No |
| 201422_at | IFI30 | 0.494 | .037 | 0.440 | No |
| 221840_at | PTPRE | 0.491 | .025 | 0.386 | Yes |
| 221698_s_at | CLEC7A | 0.480 | .071 | 0.434 | No |
| 211429_s_at | SERPINA1 | 0.446 | .036 | 0.335 | Yes |
| 205653_at | CTSG | 0.445 | .027 | 0.421 | No |
| 202833_s_at | SERPINA1 | 0.441 | .062 | 0.270 | Yes |
| 230748_at | SLC16A6 | 0.439 | .092 | 0.514 | Yes |
| 222670_s_at | MAFB | 0.432 | .020 | 0.567 | No |
| 203948_s_at | MPO | 0.423 | .052 | 0.551 | Yes |
| 202207_at | ARL4C | 0.423 | .072 | 0.319 | No |
| 218454_at | FLJ22662 | 0.405 | .041 | 0.324 | No |
| 204971_at | CSTA | 0.397 | .042 | 0.464 | No |
| 210254_at | MS4A3 | 0.334 | .024 | 0.376 | No |
| 205237_at | FCN1 | 0.324 | .021 | 0.333 | No |
SACO indicates sequential analysis of chromatin occupancy; and —, not available.