Table 2

EZH2 target gene enrichment in miR-26a-induced gene expression pattern

Gene symbolDescriptionProbe setGeometric mean of intensities (class empty/class miR-26a)Fold change after PcG knock-down*
ARHGAP24 Rho GTPase-activating protein 24 1566825_at 0.7037292 1.5 
ATAD2 ATPase family, AAA domain containing 2 222740_at 1.3870516 −1.9 
CCNB1 Cyclin B1 214710_s_at 1.3400383 −1.5 
CCNE2 Cyclin E2 205034_at 1.5680341 −2.5 
CDC25A Cell division cycle 25 homolog A (S. cerevisiae1555772_a_at 1.3642922 −1.9 
CDC6 Cell division cycle 6 homolog (S. cerevisiae203968_s_at 1.4108894 −3.1 
CDT1 Chromatin licensing and DNA replication factor 1 228868_x_at 1.5277866 −2.2 
CHAF1A Chromatin assembly factor 1, subunit A (p150) 203976_s_at 1.5635639 −6.2 
CUGBP2 CUG triplet repeat, RNA binding protein 2 242268_at 0.7193129 1.7 
DCC1 defective in sister chromatid cohesion homolog 1 (S. cerevisiae219000_s_at 1.3318879 −1.6 
GMNN Geminin, DNA replication inhibitor 218350_s_at 1.3320183 −2 
GTSE1 G2- and S-phase expressed 1 215942_s_at 1.4042593 −3.4 
HELLS Helicase, lymphoid-specific 220085_at 1.3691602 −2.3 
LRAP Leukocyte-derived arginine aminopeptidase 240338_at 0.630956 1.4 
MCM10 MCM10 minichromosome maintenance deficient 10 (S. cerevisiae220651_s_at 1.4244193 −3.1 
MCM4 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae222037_at 1.2871303 −4.8 
MKI67 Antigen identified by monoclonal antibody Ki-67 212022_s_at 1.4520355 −2.7 
MYBL1 v-myb myeloblastosis viral oncogene homolog (avian)-like 1 213906_at 1.5254951 −1.7 
ORC1L Origin recognition complex, subunit 1-like (yeast) 205085_at 1.511178 −2.9 
PDE4DIP Phosphodiesterase 4D interacting protein (myomegalin) 232615_at 0.7658641 1.1 
RFC4 Replication factor C (activator 1) 4, 37kDa 204023_at 1.4484428 −1.9 
SKP2 S-phase kinase-associated protein 2 (p45) 210567_s_at 1.4732182 −2.2 
SLC17A5 Solute carrier family 17 (anion/sugar transporter), member 5 221041_s_at 0.7774443 1.3 
SOX5 SRY (sex determining region Y)-box 5 215768_at 0.685878 1.7 
TncRNA Trophoblast-derived noncoding RNA 238320_at 0.5457627 1.9 
ZBTB1 Zinc finger and BTB domain containing 1 1557036_at 0.7410104 4.9 
ZBTB10 zinc finger and BTB domain containing 10 222863_at 0.7321463 2.6 
Gene symbolDescriptionProbe setGeometric mean of intensities (class empty/class miR-26a)Fold change after PcG knock-down*
ARHGAP24 Rho GTPase-activating protein 24 1566825_at 0.7037292 1.5 
ATAD2 ATPase family, AAA domain containing 2 222740_at 1.3870516 −1.9 
CCNB1 Cyclin B1 214710_s_at 1.3400383 −1.5 
CCNE2 Cyclin E2 205034_at 1.5680341 −2.5 
CDC25A Cell division cycle 25 homolog A (S. cerevisiae1555772_a_at 1.3642922 −1.9 
CDC6 Cell division cycle 6 homolog (S. cerevisiae203968_s_at 1.4108894 −3.1 
CDT1 Chromatin licensing and DNA replication factor 1 228868_x_at 1.5277866 −2.2 
CHAF1A Chromatin assembly factor 1, subunit A (p150) 203976_s_at 1.5635639 −6.2 
CUGBP2 CUG triplet repeat, RNA binding protein 2 242268_at 0.7193129 1.7 
DCC1 defective in sister chromatid cohesion homolog 1 (S. cerevisiae219000_s_at 1.3318879 −1.6 
GMNN Geminin, DNA replication inhibitor 218350_s_at 1.3320183 −2 
GTSE1 G2- and S-phase expressed 1 215942_s_at 1.4042593 −3.4 
HELLS Helicase, lymphoid-specific 220085_at 1.3691602 −2.3 
LRAP Leukocyte-derived arginine aminopeptidase 240338_at 0.630956 1.4 
MCM10 MCM10 minichromosome maintenance deficient 10 (S. cerevisiae220651_s_at 1.4244193 −3.1 
MCM4 MCM4 minichromosome maintenance deficient 4 (S. cerevisiae222037_at 1.2871303 −4.8 
MKI67 Antigen identified by monoclonal antibody Ki-67 212022_s_at 1.4520355 −2.7 
MYBL1 v-myb myeloblastosis viral oncogene homolog (avian)-like 1 213906_at 1.5254951 −1.7 
ORC1L Origin recognition complex, subunit 1-like (yeast) 205085_at 1.511178 −2.9 
PDE4DIP Phosphodiesterase 4D interacting protein (myomegalin) 232615_at 0.7658641 1.1 
RFC4 Replication factor C (activator 1) 4, 37kDa 204023_at 1.4484428 −1.9 
SKP2 S-phase kinase-associated protein 2 (p45) 210567_s_at 1.4732182 −2.2 
SLC17A5 Solute carrier family 17 (anion/sugar transporter), member 5 221041_s_at 0.7774443 1.3 
SOX5 SRY (sex determining region Y)-box 5 215768_at 0.685878 1.7 
TncRNA Trophoblast-derived noncoding RNA 238320_at 0.5457627 1.9 
ZBTB1 Zinc finger and BTB domain containing 1 1557036_at 0.7410104 4.9 
ZBTB10 zinc finger and BTB domain containing 10 222863_at 0.7321463 2.6 
*

Bracken et al.34 

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