Table 1

Probe sets identifying independent predictors of relapse in childhood ALL

Probe set IdGene nameGene symbolBiologic processP*
201291_s_at Topoisomerase (DNA) II alpha 170kDa TOP2A DNA replication, DNA topologic change, DNA repair .014 
203022_at Ribonuclease H2, large subunit RNASEH2A DNA replication, RNA catabolism, RNA metabolism .032 
204441_s_at Polymerase (DNA directed), alpha 2 (70-kDa subunit) POLA2 DNA replication .016 
201897_s_at CDC28 protein kinase regulatory subunit 1B CKS1B Cell cycle < .001 
202705_at Cyclin B2 CCNB2 Cell cycle .010 
203214_x_at Cell division cycle 2, G1 to S and G2 to M CDC2 Cell cycle .016 
203362_s_at MAD2 mitotic arrest deficient-like 1 (yeast) MAD2L1 Cell cycle .010 
212949_at Barren homolog 1 (Drosophila) BRRN1 Cell cycle .021 
204334_at Kruppel-like factor 7 (ubiquitous) KLF7 Cell cycle, transcription .015 
201457_x_at BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) BUB3 Mitosis < .001 
218039_at Nucleolar and spindle associated protein 1 NUSAP1 Mitosis .022 
200853_at H2A histone family, member Z H2AFZ Nucleosome assembly, chromosome organization < .001 
213911_s_at H2A histone family, member Z H2AFZ  .004 
204603_at Exonuclease 1 EXO1 DNA repair .004 
219650_at FLJ20105 protein FLJ20105 Unknown < .001 
Probe set IdGene nameGene symbolBiologic processP*
201291_s_at Topoisomerase (DNA) II alpha 170kDa TOP2A DNA replication, DNA topologic change, DNA repair .014 
203022_at Ribonuclease H2, large subunit RNASEH2A DNA replication, RNA catabolism, RNA metabolism .032 
204441_s_at Polymerase (DNA directed), alpha 2 (70-kDa subunit) POLA2 DNA replication .016 
201897_s_at CDC28 protein kinase regulatory subunit 1B CKS1B Cell cycle < .001 
202705_at Cyclin B2 CCNB2 Cell cycle .010 
203214_x_at Cell division cycle 2, G1 to S and G2 to M CDC2 Cell cycle .016 
203362_s_at MAD2 mitotic arrest deficient-like 1 (yeast) MAD2L1 Cell cycle .010 
212949_at Barren homolog 1 (Drosophila) BRRN1 Cell cycle .021 
204334_at Kruppel-like factor 7 (ubiquitous) KLF7 Cell cycle, transcription .015 
201457_x_at BUB3 budding uninhibited by benzimidazoles 3 homolog (yeast) BUB3 Mitosis < .001 
218039_at Nucleolar and spindle associated protein 1 NUSAP1 Mitosis .022 
200853_at H2A histone family, member Z H2AFZ Nucleosome assembly, chromosome organization < .001 
213911_s_at H2A histone family, member Z H2AFZ  .004 
204603_at Exonuclease 1 EXO1 DNA repair .004 
219650_at FLJ20105 protein FLJ20105 Unknown < .001 
*

Association with cumulative incidence of relapse by Fine and Gray method. The expression of each gene was treated as a continuous variable and adjusted for age, leukocyte count at diagnosis, and genetic subtype.

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