The outcomes of haplotype analysis and its potential association with the susceptibility to chronic myeloid leukemia
Block . | Gene . | SNP ID . | Haplo-type . | Frequency . | Unadjusted . | Adjusted . | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
SNP1 . | SNP2 . | SNP3 . | Overall . | Case . | Control . | Omnibus P . | Haplotype-specific P . | Omnibus P . | Haplotype-specific P . | |||
2 | CSF3 | rs25645 | rs1042658 | |||||||||
A | C | AC | 0.389 | 0.399 | 0.380 | .15 | .58 | .55 | .28 | |||
G | T | GT | 0.338 | 0.303 | 0.370 | .06* | .64 | |||||
G | C | GC | 0.273 | 0.297 | 0.250 | .14 | .53 | |||||
3 | VEGFA | rs699947 | rs833061 | rs2010963 | ||||||||
A | C | G | ACG | 0.478 | 0.525 | 0.433 | .04† | .01† | .30 | .12 | ||
C | T | C | CTC | 0.335 | 0.304 | 0.364 | .09* | .28 | ||||
C | T | G | CTG | 0.187 | 0.171 | 0.203 | .27 | .51 | ||||
5 | BCL2 | rs1801018 | rs2279115 | |||||||||
A | C | AC | 0.483 | 0.523 | 0.447 | .12 | .04† | .16 | .09* | |||
G | A | GA | 0.409 | 0.379 | 0.436 | .12 | .06* | |||||
A | A | AA | 0.108 | 0.098 | 0.117 | .43 | .74 | |||||
8 | FAS | rs2234767 | rs1800682 | |||||||||
G | T | GT | 0.528 | 0.505 | 0.551 | .39 | .22 | 1.00 | .65 | |||
G | C | GC | 0.357 | 0.382 | 0.334 | .18 | .70 | |||||
A | C | AC | 0.114 | 0.113 | 0.115 | .93 | .87 | |||||
13 | CASP10 | rs13010627 | rs13006529 | rs3834129 | ||||||||
G | T | A | GTA | 0.54 | 0.518 | 0.558 | .49 | .30 | .08* | .09* | ||
G | A | C | GAC | 0.386 | 0.398 | 0.376 | .56 | .51 | ||||
A | A | C | AAC | 0.074 | 0.084 | 0.066 | .37 | .05* |
Block . | Gene . | SNP ID . | Haplo-type . | Frequency . | Unadjusted . | Adjusted . | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
SNP1 . | SNP2 . | SNP3 . | Overall . | Case . | Control . | Omnibus P . | Haplotype-specific P . | Omnibus P . | Haplotype-specific P . | |||
2 | CSF3 | rs25645 | rs1042658 | |||||||||
A | C | AC | 0.389 | 0.399 | 0.380 | .15 | .58 | .55 | .28 | |||
G | T | GT | 0.338 | 0.303 | 0.370 | .06* | .64 | |||||
G | C | GC | 0.273 | 0.297 | 0.250 | .14 | .53 | |||||
3 | VEGFA | rs699947 | rs833061 | rs2010963 | ||||||||
A | C | G | ACG | 0.478 | 0.525 | 0.433 | .04† | .01† | .30 | .12 | ||
C | T | C | CTC | 0.335 | 0.304 | 0.364 | .09* | .28 | ||||
C | T | G | CTG | 0.187 | 0.171 | 0.203 | .27 | .51 | ||||
5 | BCL2 | rs1801018 | rs2279115 | |||||||||
A | C | AC | 0.483 | 0.523 | 0.447 | .12 | .04† | .16 | .09* | |||
G | A | GA | 0.409 | 0.379 | 0.436 | .12 | .06* | |||||
A | A | AA | 0.108 | 0.098 | 0.117 | .43 | .74 | |||||
8 | FAS | rs2234767 | rs1800682 | |||||||||
G | T | GT | 0.528 | 0.505 | 0.551 | .39 | .22 | 1.00 | .65 | |||
G | C | GC | 0.357 | 0.382 | 0.334 | .18 | .70 | |||||
A | C | AC | 0.114 | 0.113 | 0.115 | .93 | .87 | |||||
13 | CASP10 | rs13010627 | rs13006529 | rs3834129 | ||||||||
G | T | A | GTA | 0.54 | 0.518 | 0.558 | .49 | .30 | .08* | .09* | ||
G | A | C | GAC | 0.386 | 0.398 | 0.376 | .56 | .51 | ||||
A | A | C | AAC | 0.074 | 0.084 | 0.066 | .37 | .05* |