Table 1.

Top 20 CISs

CIS window (hg19)No. ISsGenes in CISP
Chr3:168760000-169185000 187 MECOM <1.337e-07 
Chr11:33785000-34075000 155 LMO2, FBXO3, CAPRIN1 <2.002e-07 
Chr15:74955000-75560000 134 C15orf39, GOLGA6C, PPCDC, SCAMP5, RPP25, COX5A, FAM219B, MPI, SCAMP2, ULK3, CPLX3, LMAN1L, MIR4513, CSK, CYP1A2, CYP1A1, EDC3 <3.359e-07 
Chr21:16405000-16950000 126 NRIP1 <7.754e-07 
Chr1:234570000-235225000 118 LOC100506810, LINC00184, IRF2BP2, LOC100506795, TARBP1 <1.180e-07 
Chr12:11705000-12180000 108 ETV6, LOC338817 <1.983e-07 
Chr20:52150000-52730000 104 ZNF217, SUMO1P1, MIR4756, BCAS1 <4.352e-07 
Chr21:43255000-43735000 100 C21orf128, UMODL1, ZNF295-AS1, ZBTB21, ABCG1, C2CD2, TFF3, PRDM15 <7.754e-07 
Chr6:36940000-37290000 95 PIM1, TBC1D22B, TMEM217, FGD2, MTCH1 <1.558e-07 
Chr2:64785000-65455000 94 SERTAD2, LOC339807, AFTPH, LOC400958, SLC1A4, CEP68, RAB1A, ACTR2 <1.115e-07 
Chr2:113310000-113725000 93 SLC20A1, FLJ42351, CKAP2L, IL1A, CHCHD5, IL1B, POLR1B, IL37 <1.115e-07 
Chr6:2640000-3030000 92 WRNIP1, MYLK4, SERPINB1, MIR4645, MGC39372, SERPINB9, SERPINB6, LINC01011, NQO2, HTATSF1P2 <1.558e-07 
Chr9:20275000-20590000 91 MIR4473, MIR4474, MLLT3 <2.379e-07 
Chr2:43030000-43510000 90 ZFP36L2, LOC100129726, THADA <1.115e-07 
Chr18:60445000-61040000 90 BCL2, KDSR, PHLPP1 <3.502e-07 
Chr17:55320000-55675000 88 MSI2 <3.412e-07 
Chr17:40330000-40735000 87 STAT5A, STAT5B, STAT3, GHDC, PTRF, HCRT, KCNH4, ATP6V0A1, MIR5010, NAGLU, HSD17B1, COASY, MLX, PSMC3IP, FAM134C <3.412e-07 
Chr5:75515000-76320000 87 S100Z, F2RL1, CRHBP, F2R, NCRUPAR, F2RL2, IQGAP2, SV2C <1.502e-07 
Chr2:16405000-16870000 85 FAM49A <1.115e-07 
Chr7:2350000-3040000 84 GNA12, AMZ1, TTYH3, IQCE, BRAT1, MIR4648, LFNG, CARD11, CHST12, EIF3B, SNX8 <1.725e-07 
CIS window (hg19)No. ISsGenes in CISP
Chr3:168760000-169185000 187 MECOM <1.337e-07 
Chr11:33785000-34075000 155 LMO2, FBXO3, CAPRIN1 <2.002e-07 
Chr15:74955000-75560000 134 C15orf39, GOLGA6C, PPCDC, SCAMP5, RPP25, COX5A, FAM219B, MPI, SCAMP2, ULK3, CPLX3, LMAN1L, MIR4513, CSK, CYP1A2, CYP1A1, EDC3 <3.359e-07 
Chr21:16405000-16950000 126 NRIP1 <7.754e-07 
Chr1:234570000-235225000 118 LOC100506810, LINC00184, IRF2BP2, LOC100506795, TARBP1 <1.180e-07 
Chr12:11705000-12180000 108 ETV6, LOC338817 <1.983e-07 
Chr20:52150000-52730000 104 ZNF217, SUMO1P1, MIR4756, BCAS1 <4.352e-07 
Chr21:43255000-43735000 100 C21orf128, UMODL1, ZNF295-AS1, ZBTB21, ABCG1, C2CD2, TFF3, PRDM15 <7.754e-07 
Chr6:36940000-37290000 95 PIM1, TBC1D22B, TMEM217, FGD2, MTCH1 <1.558e-07 
Chr2:64785000-65455000 94 SERTAD2, LOC339807, AFTPH, LOC400958, SLC1A4, CEP68, RAB1A, ACTR2 <1.115e-07 
Chr2:113310000-113725000 93 SLC20A1, FLJ42351, CKAP2L, IL1A, CHCHD5, IL1B, POLR1B, IL37 <1.115e-07 
Chr6:2640000-3030000 92 WRNIP1, MYLK4, SERPINB1, MIR4645, MGC39372, SERPINB9, SERPINB6, LINC01011, NQO2, HTATSF1P2 <1.558e-07 
Chr9:20275000-20590000 91 MIR4473, MIR4474, MLLT3 <2.379e-07 
Chr2:43030000-43510000 90 ZFP36L2, LOC100129726, THADA <1.115e-07 
Chr18:60445000-61040000 90 BCL2, KDSR, PHLPP1 <3.502e-07 
Chr17:55320000-55675000 88 MSI2 <3.412e-07 
Chr17:40330000-40735000 87 STAT5A, STAT5B, STAT3, GHDC, PTRF, HCRT, KCNH4, ATP6V0A1, MIR5010, NAGLU, HSD17B1, COASY, MLX, PSMC3IP, FAM134C <3.412e-07 
Chr5:75515000-76320000 87 S100Z, F2RL1, CRHBP, F2R, NCRUPAR, F2RL2, IQGAP2, SV2C <1.502e-07 
Chr2:16405000-16870000 85 FAM49A <1.115e-07 
Chr7:2350000-3040000 84 GNA12, AMZ1, TTYH3, IQCE, BRAT1, MIR4648, LFNG, CARD11, CHST12, EIF3B, SNX8 <1.725e-07 

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