Table 1

Current WHO classification of Philadelphia-negative myeloproliferative neoplasms, their genetic basis, and clinical relevance of genetic lesions

Nosologic entities of the WHO classification and founding driver genes and their somatic mutationsPhenotypic switch and disease progressionDiagnostic and prognostic implications of genetic lesions
Polycythemia vera   
JAK2 (V617F) in about 95% of patients JAK2 exon 12 mutations in about 5% of patients Patients with polycythemia vera may progress to myelofibrosis, and patients with myelofibrosis evolving from polycythemia vera have a mutant allele burden close to 100%, unambiguously indicating the presence of a dominant clone of cells that are homozygous for the mutation; the occurrence of subclonal driver mutations may lead to leukemic transformation Polycythemia vera is a condition almost exclusively associated with gain-of-function mutations of JAK2. The combination of erythrocytosis (ie, Hb >17 g/dL in males, and >16 g/dL in females) and JAK2 mutation, in the absence of bone marrow fibrosis, may be considered diagnostic of polycythemia vera 
Essential thrombocythemia   
JAK2 (V617F) in about 60%-65% of cases MPL exon 10 mutations in about 5% of cases CALR exon 9 indels in about 20%-25% of cases About 5%-10% of patients do not carry any of the above somatic mutations Transition from heterozygosity to homozygosity for JAK2 (V617F) may be associated with progression from essential thrombocythemia to polycythemia vera; all patients with essential thrombocythemia carrying a somatic mutation in JAK2, MPL, or CARL may progress to secondary myelofibrosis, while the occurrence of subclonal driver mutations may lead to leukemic transformation The combination of thrombocytosis (>400 × 109/L) and JAK2 (V617F), or an MPL exon 10 mutation, or a CALR exon 9 indel in the absence of bone marrow fibrosis and erythrocytosis may be considered as diagnostic of essential thrombocythemia; patients with a CALR exon 9 mutation have very high platelet counts but a relatively low risk of thrombosis (much lower than that of patients with the JAK2 mutation) 
Primary myelofibrosis   
JAK2 (V617F) in about 60%-65% of cases MPL exon 10 mutations in about 5% of cases CALR exon 9 indels in about 20%-25% of cases About 5%-10% of patients do not carry any of the above somatic mutations The occurrence of subclonal driver mutations in genes like ASXL1, DNMT3A, EZH2, IDH1/IDH2, SRSF2, or TP53 is associated with worse clinical course and higher risk of progression to blast phase or leukemic transformation; somatic mutation of ASXL1 appears to have the most detrimental effect The diagnosis of primary myelofibrosis should now include as a major criterion not only the presence of JAK2 (V617F) or an MPL exon 10 mutation, but also that of a CALR exon 9 indel; patients with myelofibrosis carrying a CALR exon 9 indel have an indolent clinical course, and a far better survival than those carrying JAK2 (V617F) or an MPL mutation, or especially those with nonmutated JAK2, CALR, and MPL; these latter have a very poor prognosis and a particularly high risk of leukemic transformation 
Nosologic entities of the WHO classification and founding driver genes and their somatic mutationsPhenotypic switch and disease progressionDiagnostic and prognostic implications of genetic lesions
Polycythemia vera   
JAK2 (V617F) in about 95% of patients JAK2 exon 12 mutations in about 5% of patients Patients with polycythemia vera may progress to myelofibrosis, and patients with myelofibrosis evolving from polycythemia vera have a mutant allele burden close to 100%, unambiguously indicating the presence of a dominant clone of cells that are homozygous for the mutation; the occurrence of subclonal driver mutations may lead to leukemic transformation Polycythemia vera is a condition almost exclusively associated with gain-of-function mutations of JAK2. The combination of erythrocytosis (ie, Hb >17 g/dL in males, and >16 g/dL in females) and JAK2 mutation, in the absence of bone marrow fibrosis, may be considered diagnostic of polycythemia vera 
Essential thrombocythemia   
JAK2 (V617F) in about 60%-65% of cases MPL exon 10 mutations in about 5% of cases CALR exon 9 indels in about 20%-25% of cases About 5%-10% of patients do not carry any of the above somatic mutations Transition from heterozygosity to homozygosity for JAK2 (V617F) may be associated with progression from essential thrombocythemia to polycythemia vera; all patients with essential thrombocythemia carrying a somatic mutation in JAK2, MPL, or CARL may progress to secondary myelofibrosis, while the occurrence of subclonal driver mutations may lead to leukemic transformation The combination of thrombocytosis (>400 × 109/L) and JAK2 (V617F), or an MPL exon 10 mutation, or a CALR exon 9 indel in the absence of bone marrow fibrosis and erythrocytosis may be considered as diagnostic of essential thrombocythemia; patients with a CALR exon 9 mutation have very high platelet counts but a relatively low risk of thrombosis (much lower than that of patients with the JAK2 mutation) 
Primary myelofibrosis   
JAK2 (V617F) in about 60%-65% of cases MPL exon 10 mutations in about 5% of cases CALR exon 9 indels in about 20%-25% of cases About 5%-10% of patients do not carry any of the above somatic mutations The occurrence of subclonal driver mutations in genes like ASXL1, DNMT3A, EZH2, IDH1/IDH2, SRSF2, or TP53 is associated with worse clinical course and higher risk of progression to blast phase or leukemic transformation; somatic mutation of ASXL1 appears to have the most detrimental effect The diagnosis of primary myelofibrosis should now include as a major criterion not only the presence of JAK2 (V617F) or an MPL exon 10 mutation, but also that of a CALR exon 9 indel; patients with myelofibrosis carrying a CALR exon 9 indel have an indolent clinical course, and a far better survival than those carrying JAK2 (V617F) or an MPL mutation, or especially those with nonmutated JAK2, CALR, and MPL; these latter have a very poor prognosis and a particularly high risk of leukemic transformation 

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