Genomic coordinates of RDMs and putative FOXP3 binding site association
| Gene . | Full name . | Chr. . | Start . | End . | nTreg Meth. . | FOXP3 ChIP . |
|---|---|---|---|---|---|---|
| HIVEP3 | Human immunodeficiency virus type 1 enhancer binding protein 3 | chr1 | 42384310 | 42384564 | Hyper | Genomic |
| TNFRSF9 | Tumor necrosis factor receptor superfamily, member 9 | chr1 | 8001027 | 8001309 | Hypo | |
| AIM2 | Absent in melanoma 2 | chr1 | 159046773 | 159047163 | Hypo | Genomic |
| PYHIN1 | Pyrin and HIN domain family, member 1 | chr1 | 158900088 | 158900644 | Hypo | Genomic |
| NA | NA | chr1 | 38941882 | 38942403 | Hyper | |
| RUNX3 | Runt-related transcription factor 3 | chr1 | 25291385 | 25291546 | Hyper | Genomic |
| PRKCZ | Protein kinase C, ζ | chr1 | 2003864 | 2004346 | Hypo | |
| VPS13D | Vacuolar protein sorting 13 homolog D (Saccharomyces cerevisiae) | chr1 | 12538341 | 12538678 | Hyper | |
| TNFRSF4 | Tumor necrosis factor receptor superfamily, member 4 | chr1 | 1150085 | 1150416 | Hypo | |
| CD160 | CD160 molecule | chr1 | 145715571 | 145715719 | Hypo | |
| PAOX | Polyamine oxidase (exo-N4-amino) | chr10 | 135202522 | 135203200 | Hypo | |
| NA | NA | chr10 | 8373416 | 8373659 | Hyper | Genomic |
| NET1 | Neuroepithelial cell transforming 1 | chr10 | 5488366 | 5488628 | Hyper | |
| ADO | 2-aminoethanethiol (cysteamine) dioxygenase | chr10 | 64565642 | 64565772 | Hypo | |
| NA | NA | chr10 | 90749920 | 90750176 | Hypo | |
| FBXO18 | F-box protein, helicase, 18 | chr10 | 5935953 | 5936426 | Hypo | |
| CXCR5 | Chemokine (C-X-C motif) receptor 5 | chr11 | 118754280 | 118754593 | Hypo | |
| CD248 | CD248 molecule, endosialin | chr11 | 66084469 | 66084841 | Hyper | |
| LRRC32 | Leucine-rich repeat containing 32 | chr11 | 76380921 | 76381236 | Hypo | |
| APLP2 | Amyloid β (A4) precursor-like protein 2 | chr11 | 129992297 | 129992368 | Hypo | |
| BCL9L | B-cell CLL/lymphoma 9-like | chr11 | 118781728 | 118781978 | Hyper | |
| CRY2 | Cryptochrome 2 (photolyase-like) | chr11 | 45868398 | 45868501 | Hypo | |
| NA | NA | chr11 | 62621178 | 62621406 | Hypo | Genomic |
| ACER3 | Alkaline ceramidase 3 | chr11 | 76571458 | 76571610 | Hyper | |
| DUSP6 | Dual-specificity phosphatase 6 | chr12 | 89744471 | 89744701 | Hyper | |
| IKZF4 | IKAROS family zinc finger 4 (Eos) | chr12 | 56414442 | 56414533 | Hypo | |
| KRT72 | Keratin 72 | chr12 | 52994933 | 52995295 | Hypo | |
| NA | NA | chr12 | 54413000 | 54413384 | Hyper | |
| NCOR2 | Nuclear receptor corepressor 2 | chr12 | 124990897 | 124991139 | Hyper | |
| C12orf42 | Chromosome 12 open reading frame 42 | chr12 | 103695883 | 103696381 | Hyper | |
| LOC338799 | Uncharacterized LOC338799 | chr12 | 122235169 | 122235560 | Hypo | |
| NA | NA | chr12 | 125258948 | 125259531 | Hypo | Genomic |
| NCOR2 | Nuclear receptor corepressor 2 | chr12 | 124941307 | 124941423 | Hypo | |
| SCNN1A | Sodium channel, nonvoltage-gated 1 α subunit | chr12 | 6486598 | 6486709 | Hyper | |
| NA | NA | chr13 | 34184932 | 34185311 | Hypo | Genomic |
| EDNRB | Endothelin receptor type B | chr13 | 78494064 | 78494272 | Hypo | |
| TFDP1 | Transcription factor Dp-1 | chr13 | 114287374 | 114287735 | Hyper | |
| NA | NA | chr13 | 40746370 | 40746648 | Hyper | |
| TC2N | Tandem C2 domains, nuclear | chr14 | 92333765 | 92334271 | Hyper | Genomic |
| BCL11B | B-cell CLL/lymphoma 11B (zinc finger protein) | chr14 | 99664107 | 99664344 | Hyper | |
| MMP14 | Matrix metallopeptidase 14 (membrane-inserted) | chr14 | 23305780 | 23305957 | Hyper | |
| APBA2 | Amyloid β (A4) precursor protein-binding, family A, member 2 | chr15 | 29213626 | 29213860 | Hyper | |
| SMAD3 | SMAD family member 3 | chr15 | 67356310 | 67356942 | Hyper | |
| THBS1 | Thrombospondin 1 | chr15 | 39871808 | 39872071 | Hypo | |
| LOC91450 | Uncharacterized LOC91450 | chr15 | 78286521 | 78286737 | Hypo | |
| NA | NA | chr15 | 70767183 | 70767649 | Hyper | |
| ANKRD11 | Ankyrin repeat domain 11 | chr16 | 89421700 | 89422212 | Hypo | |
| ITGAL | Integrin, α L (antigen CD11A (p180), lymphocyte function-associated antigen 1; α polypeptide) | chr16 | 30485383 | 30485966 | Hypo | |
| NA | NA | chr16 | 84552874 | 84553585 | Hyper | |
| ANKRD11 | Ankyrin repeat domain 11 | chr16 | 89390609 | 89390968 | Hypo | |
| ACSF3 | acyl-CoA synthetase family member 3 | chr16 | 89163343 | 89163800 | Hyper | |
| CA5A | Carbonic anhydrase VA, mitochondrial | chr16 | 87958145 | 87958493 | Hypo | |
| MIR21 | microRNA 21 | chr17 | 57917974 | 57918682 | Hypo | Genomic/qPCR |
| KSR1 | Kinase suppressor of ras 1 | chr17 | 25798741 | 25799447 | Hypo | Genomic |
| KCNAB3 | Potassium voltage-gated channel, shaker-related subfamily, β member 3 | chr17 | 7832764 | 7833237 | Hypo | |
| VMP1 | Vacuole membrane protein 1 | chr17 | 57915665 | 57915773 | Hypo | Genomic |
| RPTOR | Regulatory associated protein of MTOR, complex 1 | chr17 | 78755379 | 78755604 | Hyper | |
| ST6GALNAC1 | ST6 (α-N-acetyl-neuraminyl-2,3-β-galactosyl-1,3)-N-acetylgalactosaminide α-2,6-sialyltransferase 1 | chr17 | 74639731 | 74640078 | Hyper | |
| ZPBP2 | Zona pellucida binding protein 2 | chr17 | 38023993 | 38024636 | Hypo | Genomic |
| MEOX1 | Mesenchyme homeobox 1 | chr17 | 41739130 | 41739326 | Hypo | Genomic |
| SCARF1 | Scavenger receptor class F, member 1 | chr17 | 1548881 | 1549108 | Hyper | |
| SEPT9 | Septin 9 | chr17 | 75473577 | 75474070 | Hyper | |
| AXIN2 | Axin 2 | chr17 | 63534340 | 63534688 | Hyper | |
| SEPT9 | Septin 9 | chr17 | 75451779 | 75452100 | Hyper | |
| TNFRSF13B | Tumor necrosis factor receptor superfamily, member 13B | chr17 | 16875349 | 16875596 | Hypo | |
| LAMA3 | Laminin, α 3 | chr18 | 21452730 | 21452895 | Hyper | |
| TGIF1 | TGFB-induced factor homeobox 1 | chr18 | 3447454 | 3447713 | Hyper | |
| SLC1A5 | Solute carrier family 1 (neutral amino acid transporter), member 5 | chr19 | 47288039 | 47288263 | Hypo | |
| EMR3 | egf-like module containing, mucin-like, hormone receptor-like 3 | chr19 | 14785593 | 14785849 | Hyper | |
| TYROBP | TYRO protein tyrosine kinase binding protein | chr19 | 36400049 | 36400437 | Hyper | |
| GNG8 | Guanine nucleotide binding protein (G protein), γ 8 | chr19 | 47139338 | 47139761 | Hypo | |
| KCNN4 | Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 | chr19 | 44285297 | 44285594 | Hypo | Genomic |
| NA | NA | chr2 | 43398079 | 43398271 | Hyper | |
| GALNT5 | UDP-N-acetyl-α-d-galactosamine:polypeptide N-Acetylgalactosaminyltransferase 5 (GalNAc-T5) | chr2 | 158114069 | 158114300 | Hyper | |
| CASP10 | Caspase 10, apoptosis-related cysteine peptidase | chr2 | 202047246 | 202047754 | Hyper | Genomic |
| HDAC4 | Histone deacetylase 4 | chr2 | 240196769 | 240197131 | Hypo | Genomic |
| FAM124B | Family with sequence similarity 124B | chr2 | 225265963 | 225266346 | Hyper | |
| SP140 | SP140 nuclear body protein | chr2 | 231090376 | 231090745 | Hypo | Genomic |
| NA | NA | chr2 | 242805838 | 242806119 | Hypo | Genomic |
| SNED1 | Sushi, nidogen, and EGF-like domains 1 | chr2 | 241974858 | 241975140 | Hypo | |
| BCL11A | B-cell CLL/lymphoma 11A (zinc finger protein) | chr2 | 60763331 | 60763808 | Hypo | |
| CD8A | CD8a molecule | chr2 | 87018944 | 87019192 | Hyper | |
| NA | NA | chr21 | 46077454 | 46077731 | Hyper | Genomic |
| HORMAD2 | HORMA domain containing 2 | chr22 | 30476089 | 30476525 | Hyper | |
| TIGIT | T-cell immunoreceptor with Ig and ITIM domains | chr3 | 114012659 | 114012912 | Hypo | Genomic/qPCR |
| TGFBR2 | Transforming growth factor, β receptor II (70/80 kDa) | chr3 | 30647378 | 30647725 | Hyper | |
| VGLL4 | Vestigial like 4 (Drosophila) | chr3 | 11623526 | 11624023 | Hyper | |
| CD47 | CD47 molecule | chr3 | 107810678 | 107810791 | Hyper | |
| NA | NA | chr3 | 151985426 | 151985869 | Hyper | |
| PRDM8 | PR domain containing 8 | chr4 | 81119178 | 81119473 | Hyper | |
| NA | NA | chr4 | 1202509 | 1202780 | Hypo | |
| PRDM8 | PR domain containing 8 | chr4 | 81118343 | 81118794 | Hyper | |
| HPGDS | Hematopoietic prostaglandin D synthase | chr4 | 95264019 | 95264373 | Hyper | |
| RGS12 | Regulator of G-protein signaling 12 | chr4 | 3371236 | 3371652 | Hyper | |
| NA | NA | chr4 | 155661691 | 155661929 | Hypo | |
| NDNF | Neuron-derived neurotrophic factor | chr4 | 121991345 | 121991672 | Hypo | |
| CUTA | cutA divalent cation tolerance homolog (Escherichia coli) | chr6 | 33384179 | 33384537 | Hypo | |
| TNF | Tumor necrosis factor | chr6 | 31544694 | 31545473 | Hypo | |
| ZC3H12D | Zinc finger CCCH-type containing 12D | chr6 | 149806331 | 149806732 | Hypo | Genomic |
| RPS6KA2 | Ribosomal protein S6 kinase, 90 kDa, polypeptide 2 | chr6 | 166908379 | 166908811 | Hypo | |
| FLOT1 | Flotillin 1 | chr6 | 30706619 | 30706810 | Hyper | |
| ZBTB12 | Zinc finger and BTB domain containing 12 | chr6 | 31867906 | 31868025 | Hyper | |
| NA | NA | chr6 | 33386967 | 33387089 | Hypo | |
| C6orf222 | Chromosome 6 open reading frame 222 | chr6 | 36304456 | 36305155 | Hypo | |
| NA | NA | chr6 | 6588693 | 6589075 | Hyper | |
| HSD17B8 | Hydroxysteroid (17-β) dehydrogenase 8 | chr6 | 33173307 | 33173489 | Hypo | |
| TAGAP | T-cell activation RhoGTPase activating protein | chr6 | 159462964 | 159463300 | Hypo | Genomic |
| PLAGL1 | Pleiomorphic adenoma gene-like 1 | chr6 | 144386457 | 144386528 | Hypo | |
| TAP1 | Transporter 1, ATP-binding cassette, subfamily B (MDR/TAP) | chr6 | 32820102 | 32820249 | Hypo | Genomic |
| TAP2 | Transporter 2, ATP-binding cassette, subfamily B (MDR/TAP) | chr6 | 32805398 | 32805570 | Hypo | |
| AIF1 | Allograft inflammatory factor 1 | chr6 | 31583915 | 31584223 | Hyper | |
| NA | NA | chr7 | 149569883 | 149570128 | Hyper | |
| ATXN7L1 | Ataxin 7-like 1 | chr7 | 105319437 | 105319679 | Hyper | |
| GIMAP7 | GTPase, IMAP family member 7 | chr7 | 150216872 | 150217081 | Hyper | |
| UPP1 | Uridine phosphorylase 1 | chr7 | 48129797 | 48129992 | Hypo | |
| NA | NA | chr7 | 73241729 | 73242028 | Hyper | |
| WIPI2 | WD repeat domain, phosphoinositide interacting 2 | chr7 | 5271480 | 5271655 | Hyper | |
| GNA12 | Guanine nucleotide binding protein (G protein) α 12 | chr7 | 2774414 | 2774654 | Hyper | |
| NA | NA | chr7 | 157306340 | 157306592 | Hypo | |
| NA | NA | chr7 | 4652671 | 4652842 | Hyper | |
| ZHX1 | Zinc fingers and homeoboxes 1 | chr8 | 124284176 | 124284568 | Hypo | |
| NA | NA | chr8 | 61822740 | 61823275 | Hyper | |
| ANGPT1 | Angiopoietin 1 | chr8 | 108510286 | 108510343 | Hyper | |
| PLEC | Plectin | chr8 | 145028170 | 145028257 | Hyper | |
| EIF2C2 | Eukaryotic translation initiation factor 2C, 2 | chr8 | 141636174 | 141636798 | Hypo | |
| LOC286467 | Family with sequence similarity 195, member A pseudogene | chrX | 130964695 | 130965143 | Hyper | |
| MAOB | Monoamine oxidase B | chrX | 43741826 | 43741945 | Hypo |
| Gene . | Full name . | Chr. . | Start . | End . | nTreg Meth. . | FOXP3 ChIP . |
|---|---|---|---|---|---|---|
| HIVEP3 | Human immunodeficiency virus type 1 enhancer binding protein 3 | chr1 | 42384310 | 42384564 | Hyper | Genomic |
| TNFRSF9 | Tumor necrosis factor receptor superfamily, member 9 | chr1 | 8001027 | 8001309 | Hypo | |
| AIM2 | Absent in melanoma 2 | chr1 | 159046773 | 159047163 | Hypo | Genomic |
| PYHIN1 | Pyrin and HIN domain family, member 1 | chr1 | 158900088 | 158900644 | Hypo | Genomic |
| NA | NA | chr1 | 38941882 | 38942403 | Hyper | |
| RUNX3 | Runt-related transcription factor 3 | chr1 | 25291385 | 25291546 | Hyper | Genomic |
| PRKCZ | Protein kinase C, ζ | chr1 | 2003864 | 2004346 | Hypo | |
| VPS13D | Vacuolar protein sorting 13 homolog D (Saccharomyces cerevisiae) | chr1 | 12538341 | 12538678 | Hyper | |
| TNFRSF4 | Tumor necrosis factor receptor superfamily, member 4 | chr1 | 1150085 | 1150416 | Hypo | |
| CD160 | CD160 molecule | chr1 | 145715571 | 145715719 | Hypo | |
| PAOX | Polyamine oxidase (exo-N4-amino) | chr10 | 135202522 | 135203200 | Hypo | |
| NA | NA | chr10 | 8373416 | 8373659 | Hyper | Genomic |
| NET1 | Neuroepithelial cell transforming 1 | chr10 | 5488366 | 5488628 | Hyper | |
| ADO | 2-aminoethanethiol (cysteamine) dioxygenase | chr10 | 64565642 | 64565772 | Hypo | |
| NA | NA | chr10 | 90749920 | 90750176 | Hypo | |
| FBXO18 | F-box protein, helicase, 18 | chr10 | 5935953 | 5936426 | Hypo | |
| CXCR5 | Chemokine (C-X-C motif) receptor 5 | chr11 | 118754280 | 118754593 | Hypo | |
| CD248 | CD248 molecule, endosialin | chr11 | 66084469 | 66084841 | Hyper | |
| LRRC32 | Leucine-rich repeat containing 32 | chr11 | 76380921 | 76381236 | Hypo | |
| APLP2 | Amyloid β (A4) precursor-like protein 2 | chr11 | 129992297 | 129992368 | Hypo | |
| BCL9L | B-cell CLL/lymphoma 9-like | chr11 | 118781728 | 118781978 | Hyper | |
| CRY2 | Cryptochrome 2 (photolyase-like) | chr11 | 45868398 | 45868501 | Hypo | |
| NA | NA | chr11 | 62621178 | 62621406 | Hypo | Genomic |
| ACER3 | Alkaline ceramidase 3 | chr11 | 76571458 | 76571610 | Hyper | |
| DUSP6 | Dual-specificity phosphatase 6 | chr12 | 89744471 | 89744701 | Hyper | |
| IKZF4 | IKAROS family zinc finger 4 (Eos) | chr12 | 56414442 | 56414533 | Hypo | |
| KRT72 | Keratin 72 | chr12 | 52994933 | 52995295 | Hypo | |
| NA | NA | chr12 | 54413000 | 54413384 | Hyper | |
| NCOR2 | Nuclear receptor corepressor 2 | chr12 | 124990897 | 124991139 | Hyper | |
| C12orf42 | Chromosome 12 open reading frame 42 | chr12 | 103695883 | 103696381 | Hyper | |
| LOC338799 | Uncharacterized LOC338799 | chr12 | 122235169 | 122235560 | Hypo | |
| NA | NA | chr12 | 125258948 | 125259531 | Hypo | Genomic |
| NCOR2 | Nuclear receptor corepressor 2 | chr12 | 124941307 | 124941423 | Hypo | |
| SCNN1A | Sodium channel, nonvoltage-gated 1 α subunit | chr12 | 6486598 | 6486709 | Hyper | |
| NA | NA | chr13 | 34184932 | 34185311 | Hypo | Genomic |
| EDNRB | Endothelin receptor type B | chr13 | 78494064 | 78494272 | Hypo | |
| TFDP1 | Transcription factor Dp-1 | chr13 | 114287374 | 114287735 | Hyper | |
| NA | NA | chr13 | 40746370 | 40746648 | Hyper | |
| TC2N | Tandem C2 domains, nuclear | chr14 | 92333765 | 92334271 | Hyper | Genomic |
| BCL11B | B-cell CLL/lymphoma 11B (zinc finger protein) | chr14 | 99664107 | 99664344 | Hyper | |
| MMP14 | Matrix metallopeptidase 14 (membrane-inserted) | chr14 | 23305780 | 23305957 | Hyper | |
| APBA2 | Amyloid β (A4) precursor protein-binding, family A, member 2 | chr15 | 29213626 | 29213860 | Hyper | |
| SMAD3 | SMAD family member 3 | chr15 | 67356310 | 67356942 | Hyper | |
| THBS1 | Thrombospondin 1 | chr15 | 39871808 | 39872071 | Hypo | |
| LOC91450 | Uncharacterized LOC91450 | chr15 | 78286521 | 78286737 | Hypo | |
| NA | NA | chr15 | 70767183 | 70767649 | Hyper | |
| ANKRD11 | Ankyrin repeat domain 11 | chr16 | 89421700 | 89422212 | Hypo | |
| ITGAL | Integrin, α L (antigen CD11A (p180), lymphocyte function-associated antigen 1; α polypeptide) | chr16 | 30485383 | 30485966 | Hypo | |
| NA | NA | chr16 | 84552874 | 84553585 | Hyper | |
| ANKRD11 | Ankyrin repeat domain 11 | chr16 | 89390609 | 89390968 | Hypo | |
| ACSF3 | acyl-CoA synthetase family member 3 | chr16 | 89163343 | 89163800 | Hyper | |
| CA5A | Carbonic anhydrase VA, mitochondrial | chr16 | 87958145 | 87958493 | Hypo | |
| MIR21 | microRNA 21 | chr17 | 57917974 | 57918682 | Hypo | Genomic/qPCR |
| KSR1 | Kinase suppressor of ras 1 | chr17 | 25798741 | 25799447 | Hypo | Genomic |
| KCNAB3 | Potassium voltage-gated channel, shaker-related subfamily, β member 3 | chr17 | 7832764 | 7833237 | Hypo | |
| VMP1 | Vacuole membrane protein 1 | chr17 | 57915665 | 57915773 | Hypo | Genomic |
| RPTOR | Regulatory associated protein of MTOR, complex 1 | chr17 | 78755379 | 78755604 | Hyper | |
| ST6GALNAC1 | ST6 (α-N-acetyl-neuraminyl-2,3-β-galactosyl-1,3)-N-acetylgalactosaminide α-2,6-sialyltransferase 1 | chr17 | 74639731 | 74640078 | Hyper | |
| ZPBP2 | Zona pellucida binding protein 2 | chr17 | 38023993 | 38024636 | Hypo | Genomic |
| MEOX1 | Mesenchyme homeobox 1 | chr17 | 41739130 | 41739326 | Hypo | Genomic |
| SCARF1 | Scavenger receptor class F, member 1 | chr17 | 1548881 | 1549108 | Hyper | |
| SEPT9 | Septin 9 | chr17 | 75473577 | 75474070 | Hyper | |
| AXIN2 | Axin 2 | chr17 | 63534340 | 63534688 | Hyper | |
| SEPT9 | Septin 9 | chr17 | 75451779 | 75452100 | Hyper | |
| TNFRSF13B | Tumor necrosis factor receptor superfamily, member 13B | chr17 | 16875349 | 16875596 | Hypo | |
| LAMA3 | Laminin, α 3 | chr18 | 21452730 | 21452895 | Hyper | |
| TGIF1 | TGFB-induced factor homeobox 1 | chr18 | 3447454 | 3447713 | Hyper | |
| SLC1A5 | Solute carrier family 1 (neutral amino acid transporter), member 5 | chr19 | 47288039 | 47288263 | Hypo | |
| EMR3 | egf-like module containing, mucin-like, hormone receptor-like 3 | chr19 | 14785593 | 14785849 | Hyper | |
| TYROBP | TYRO protein tyrosine kinase binding protein | chr19 | 36400049 | 36400437 | Hyper | |
| GNG8 | Guanine nucleotide binding protein (G protein), γ 8 | chr19 | 47139338 | 47139761 | Hypo | |
| KCNN4 | Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 | chr19 | 44285297 | 44285594 | Hypo | Genomic |
| NA | NA | chr2 | 43398079 | 43398271 | Hyper | |
| GALNT5 | UDP-N-acetyl-α-d-galactosamine:polypeptide N-Acetylgalactosaminyltransferase 5 (GalNAc-T5) | chr2 | 158114069 | 158114300 | Hyper | |
| CASP10 | Caspase 10, apoptosis-related cysteine peptidase | chr2 | 202047246 | 202047754 | Hyper | Genomic |
| HDAC4 | Histone deacetylase 4 | chr2 | 240196769 | 240197131 | Hypo | Genomic |
| FAM124B | Family with sequence similarity 124B | chr2 | 225265963 | 225266346 | Hyper | |
| SP140 | SP140 nuclear body protein | chr2 | 231090376 | 231090745 | Hypo | Genomic |
| NA | NA | chr2 | 242805838 | 242806119 | Hypo | Genomic |
| SNED1 | Sushi, nidogen, and EGF-like domains 1 | chr2 | 241974858 | 241975140 | Hypo | |
| BCL11A | B-cell CLL/lymphoma 11A (zinc finger protein) | chr2 | 60763331 | 60763808 | Hypo | |
| CD8A | CD8a molecule | chr2 | 87018944 | 87019192 | Hyper | |
| NA | NA | chr21 | 46077454 | 46077731 | Hyper | Genomic |
| HORMAD2 | HORMA domain containing 2 | chr22 | 30476089 | 30476525 | Hyper | |
| TIGIT | T-cell immunoreceptor with Ig and ITIM domains | chr3 | 114012659 | 114012912 | Hypo | Genomic/qPCR |
| TGFBR2 | Transforming growth factor, β receptor II (70/80 kDa) | chr3 | 30647378 | 30647725 | Hyper | |
| VGLL4 | Vestigial like 4 (Drosophila) | chr3 | 11623526 | 11624023 | Hyper | |
| CD47 | CD47 molecule | chr3 | 107810678 | 107810791 | Hyper | |
| NA | NA | chr3 | 151985426 | 151985869 | Hyper | |
| PRDM8 | PR domain containing 8 | chr4 | 81119178 | 81119473 | Hyper | |
| NA | NA | chr4 | 1202509 | 1202780 | Hypo | |
| PRDM8 | PR domain containing 8 | chr4 | 81118343 | 81118794 | Hyper | |
| HPGDS | Hematopoietic prostaglandin D synthase | chr4 | 95264019 | 95264373 | Hyper | |
| RGS12 | Regulator of G-protein signaling 12 | chr4 | 3371236 | 3371652 | Hyper | |
| NA | NA | chr4 | 155661691 | 155661929 | Hypo | |
| NDNF | Neuron-derived neurotrophic factor | chr4 | 121991345 | 121991672 | Hypo | |
| CUTA | cutA divalent cation tolerance homolog (Escherichia coli) | chr6 | 33384179 | 33384537 | Hypo | |
| TNF | Tumor necrosis factor | chr6 | 31544694 | 31545473 | Hypo | |
| ZC3H12D | Zinc finger CCCH-type containing 12D | chr6 | 149806331 | 149806732 | Hypo | Genomic |
| RPS6KA2 | Ribosomal protein S6 kinase, 90 kDa, polypeptide 2 | chr6 | 166908379 | 166908811 | Hypo | |
| FLOT1 | Flotillin 1 | chr6 | 30706619 | 30706810 | Hyper | |
| ZBTB12 | Zinc finger and BTB domain containing 12 | chr6 | 31867906 | 31868025 | Hyper | |
| NA | NA | chr6 | 33386967 | 33387089 | Hypo | |
| C6orf222 | Chromosome 6 open reading frame 222 | chr6 | 36304456 | 36305155 | Hypo | |
| NA | NA | chr6 | 6588693 | 6589075 | Hyper | |
| HSD17B8 | Hydroxysteroid (17-β) dehydrogenase 8 | chr6 | 33173307 | 33173489 | Hypo | |
| TAGAP | T-cell activation RhoGTPase activating protein | chr6 | 159462964 | 159463300 | Hypo | Genomic |
| PLAGL1 | Pleiomorphic adenoma gene-like 1 | chr6 | 144386457 | 144386528 | Hypo | |
| TAP1 | Transporter 1, ATP-binding cassette, subfamily B (MDR/TAP) | chr6 | 32820102 | 32820249 | Hypo | Genomic |
| TAP2 | Transporter 2, ATP-binding cassette, subfamily B (MDR/TAP) | chr6 | 32805398 | 32805570 | Hypo | |
| AIF1 | Allograft inflammatory factor 1 | chr6 | 31583915 | 31584223 | Hyper | |
| NA | NA | chr7 | 149569883 | 149570128 | Hyper | |
| ATXN7L1 | Ataxin 7-like 1 | chr7 | 105319437 | 105319679 | Hyper | |
| GIMAP7 | GTPase, IMAP family member 7 | chr7 | 150216872 | 150217081 | Hyper | |
| UPP1 | Uridine phosphorylase 1 | chr7 | 48129797 | 48129992 | Hypo | |
| NA | NA | chr7 | 73241729 | 73242028 | Hyper | |
| WIPI2 | WD repeat domain, phosphoinositide interacting 2 | chr7 | 5271480 | 5271655 | Hyper | |
| GNA12 | Guanine nucleotide binding protein (G protein) α 12 | chr7 | 2774414 | 2774654 | Hyper | |
| NA | NA | chr7 | 157306340 | 157306592 | Hypo | |
| NA | NA | chr7 | 4652671 | 4652842 | Hyper | |
| ZHX1 | Zinc fingers and homeoboxes 1 | chr8 | 124284176 | 124284568 | Hypo | |
| NA | NA | chr8 | 61822740 | 61823275 | Hyper | |
| ANGPT1 | Angiopoietin 1 | chr8 | 108510286 | 108510343 | Hyper | |
| PLEC | Plectin | chr8 | 145028170 | 145028257 | Hyper | |
| EIF2C2 | Eukaryotic translation initiation factor 2C, 2 | chr8 | 141636174 | 141636798 | Hypo | |
| LOC286467 | Family with sequence similarity 195, member A pseudogene | chrX | 130964695 | 130965143 | Hyper | |
| MAOB | Monoamine oxidase B | chrX | 43741826 | 43741945 | Hypo |
Genes bound by FOXP3 in FOXP3-ChIP dataset are in boldface.
NA, not available; ITIM, immunoreceptor tyrosine-based inhibitory motif.