Table 5

Genes overexpressed in treatment failure according to function and canonical pathways (Ingenuity Pathway Analysis)

P (adjusted)Molecules
Function   
    Developmental process of hematopoietic progenitor cells .0122 GATA1, GATA2, WT1, CCND2, TNFRSF11A, CSF1R, IL6ST, INHBA, IRF8 
    Developmental process of mononuclear leukocytes .0002 TGFBR2, NFATC1, TNFRSF11A, TNFRSF1A, TNFRSF1B, TNFSF13B, WT1, B4GALNT1, BCL2L11, C3, CSF1R, EOMES, GATA1, GATA2, INHBA, IRF7, IRF8, ITGA4, LAMP1, LTBP1, LTBR, NCAPH2, NPPA, PRDM1, STAP2 
    Migration of macrophages .0296 ITGB1, ITGA4, CSF1R, TLR2 
    Developmental process of macrophages .0462 CSF1R, PRDM1, TNFRSF1A, INHBA, IRF7, IRF8 
    Development of blood vessel .0050 VCAM1, VASH1, SPARC, TGM2, TIMP2, COL18A1, EPHB4, ETV6, GATA2, INHBA, ITGA4, ITGB1, NPR1, PLCD1, QKI, STAB1, TGFBR2, TNFRSF1A, WT1 
Canonical pathways 
    NF-κB signaling .0017 PDGFRB, TNFRSF11A, TNFRSF1A, TNFRSF1B, TNFSF13B, LTBR, PRKCB, TLR2 
    Role of pattern recognition receptors in recognition of bcteria and viruses .0003 IRF7, IRF8, TLR2, OAS1, C3, CASP1, CLEC7A 
    Complement system .0020 C3, C7, CFD, CFH 
    Macropinocytosis .0044 ITGB1, ITGB4, PRKCB, CSF1R, ANKFY1 
P (adjusted)Molecules
Function   
    Developmental process of hematopoietic progenitor cells .0122 GATA1, GATA2, WT1, CCND2, TNFRSF11A, CSF1R, IL6ST, INHBA, IRF8 
    Developmental process of mononuclear leukocytes .0002 TGFBR2, NFATC1, TNFRSF11A, TNFRSF1A, TNFRSF1B, TNFSF13B, WT1, B4GALNT1, BCL2L11, C3, CSF1R, EOMES, GATA1, GATA2, INHBA, IRF7, IRF8, ITGA4, LAMP1, LTBP1, LTBR, NCAPH2, NPPA, PRDM1, STAP2 
    Migration of macrophages .0296 ITGB1, ITGA4, CSF1R, TLR2 
    Developmental process of macrophages .0462 CSF1R, PRDM1, TNFRSF1A, INHBA, IRF7, IRF8 
    Development of blood vessel .0050 VCAM1, VASH1, SPARC, TGM2, TIMP2, COL18A1, EPHB4, ETV6, GATA2, INHBA, ITGA4, ITGB1, NPR1, PLCD1, QKI, STAB1, TGFBR2, TNFRSF1A, WT1 
Canonical pathways 
    NF-κB signaling .0017 PDGFRB, TNFRSF11A, TNFRSF1A, TNFRSF1B, TNFSF13B, LTBR, PRKCB, TLR2 
    Role of pattern recognition receptors in recognition of bcteria and viruses .0003 IRF7, IRF8, TLR2, OAS1, C3, CASP1, CLEC7A 
    Complement system .0020 C3, C7, CFD, CFH 
    Macropinocytosis .0044 ITGB1, ITGB4, PRKCB, CSF1R, ANKFY1 
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