Table 1

Top 50 genes most highly expressed by the classical monocyte subset sorted by decreasing absolute fold change values

Gene nameFold change normalized to intermediate*
ClassicNonclassic
S100 calcium binding protein A12 (S100A12) 13.76 −2.35 
Arachidonate 5-lipoxygenase-activating protein (ALOX5AP) 13.27 −2.38 
Peptidyl arginine deiminase type IV (PADI4) 10.08 −2.19 
Neuregulin 1 (NRG1) 9.94 −1.40 
mast cell-expressed membrane protein 1 (MCEMP1) 9.93 −2.93 
Thrombospondin 1 (THBS1) 9.25 −1.46 
Cysteine-rich secretory protein LCCL domain containing 2 (CRISPLD2) 8.79 −1.61 
Coagulation factor XIII A1 polypeptide (F13A1) 8.14 −1.53 
MOCO sulphurase C-terminal domain containing 1 (MOSC1) 7.81 −1.73 
Cytochrome P450 family 27 subfamily A polypeptide 1 (CYP27A1) 7.61 −2.22 
CD163 antigen (CD163) 7.42 −3.44 
Glutaminyl-peptide cyclotransferase (QPCT) 7.31 −2.32 
ADAM metallopeptidase domain 19 (ADAM19) 7.28 −1.54 
Asialoglycoprotein receptor 2 (ASGR2) 6.82 −1.89 
Ribonuclease RNase A family 2 (RNASE2) 6.31 −2.66 
Coagulation factor V (proaccelerin labile factor; F5) 5.92 −1.44 
Folate receptor 3 (gamma; FOLR3) 5.82 −2.32 
Ribonuclease RNase A family 4 (RNASE4) 5.72 −1.58 
Aldehyde dehydrogenase 1 family member A1 (ALDH1A1) 5.70 −2.51 
Endothelial differentiation sphingolipid G-protein-coupled receptor 3 (EDG3) 5.57 −1.25 
Prokineticin 2 (PROK2) 5.52 −1.87 
C-type lectin domain family 4 member D (CLEC4D) 5.42 −1.34 
S100 calcium binding protein A9 (calgranulin B; S100A9) 5.38 −2.03 
Oncostatin M (OSM) 5.36 −2.27 
Chondroitin sulfate proteoglycan 2 (CSPG2) 5.34 −3.98 
Lectin galactoside-binding soluble 2 (GALS2) 5.33 −2.51 
Angiogenin ribonuclease RNase A family 5 (ANG) 5.26 −2.14 
Vanin 2 (VNN2) 5.21 −1.34 
Epstein-Barr virus-induced gene 2 (EBI2) 4.31 −5.13 
Urotensin 2 (UTS2) 5.06 −1.75 
Ribonuclease P RNA component H1 (RPPH1) 4.76 −1.38 
Microsomal glutathione S-transferase 1 (MGST1) 4.75 −1.88 
Interleukin 8 (IL-8) 4.74 −1.08 
Chemokine C-C motif receptor 2 (CCR2) 4.73 −1.25 
Selectin L (SELL) 4.68 −1.84 
Dysferlin limb girdle muscular dystrophy 2B (DYSF) 4.58 −1.72 
Metallothionein 1F (MT1F) 4.57 −1.36 
CD14 antigen (CD14) 4.54 −4.29 
Ribonuclease RNase A family k6 (RNASE6) 3.72 −4.44 
Colony-stimulating factor 3 receptor (CSF3R) 4.38 −1.62 
Stabilin 1 (STAB1) 2.55 −4.35 
Cytochrome P450 family 1 subfamily B polypeptide 1 (CYP1B1) 4.31 −1.16 
Alcohol dehydrogenase iron containing 1 (ADHFE1) 4.29 −1.15 
Phospholipase A2 group VII (PLA2G7) 4.27 −2.98 
Matrix metallopeptidase 25 (MMP25) 4.14 −1.30 
Zinc finger protein 395 (ZNF395) 4.11 −1.57 
Solute carrier family 2 member 3 (SLC2A3) 3.78 −3.96 
Early growth response 1 (EGR1) 3.79 −2.26 
CKLF-like MARVEL transmembrane domain containing 2 (CMTM2) 3.78 −1.15 
CD9 antigen p24 (CD9) 2.60 −3.66 
Gene nameFold change normalized to intermediate*
ClassicNonclassic
S100 calcium binding protein A12 (S100A12) 13.76 −2.35 
Arachidonate 5-lipoxygenase-activating protein (ALOX5AP) 13.27 −2.38 
Peptidyl arginine deiminase type IV (PADI4) 10.08 −2.19 
Neuregulin 1 (NRG1) 9.94 −1.40 
mast cell-expressed membrane protein 1 (MCEMP1) 9.93 −2.93 
Thrombospondin 1 (THBS1) 9.25 −1.46 
Cysteine-rich secretory protein LCCL domain containing 2 (CRISPLD2) 8.79 −1.61 
Coagulation factor XIII A1 polypeptide (F13A1) 8.14 −1.53 
MOCO sulphurase C-terminal domain containing 1 (MOSC1) 7.81 −1.73 
Cytochrome P450 family 27 subfamily A polypeptide 1 (CYP27A1) 7.61 −2.22 
CD163 antigen (CD163) 7.42 −3.44 
Glutaminyl-peptide cyclotransferase (QPCT) 7.31 −2.32 
ADAM metallopeptidase domain 19 (ADAM19) 7.28 −1.54 
Asialoglycoprotein receptor 2 (ASGR2) 6.82 −1.89 
Ribonuclease RNase A family 2 (RNASE2) 6.31 −2.66 
Coagulation factor V (proaccelerin labile factor; F5) 5.92 −1.44 
Folate receptor 3 (gamma; FOLR3) 5.82 −2.32 
Ribonuclease RNase A family 4 (RNASE4) 5.72 −1.58 
Aldehyde dehydrogenase 1 family member A1 (ALDH1A1) 5.70 −2.51 
Endothelial differentiation sphingolipid G-protein-coupled receptor 3 (EDG3) 5.57 −1.25 
Prokineticin 2 (PROK2) 5.52 −1.87 
C-type lectin domain family 4 member D (CLEC4D) 5.42 −1.34 
S100 calcium binding protein A9 (calgranulin B; S100A9) 5.38 −2.03 
Oncostatin M (OSM) 5.36 −2.27 
Chondroitin sulfate proteoglycan 2 (CSPG2) 5.34 −3.98 
Lectin galactoside-binding soluble 2 (GALS2) 5.33 −2.51 
Angiogenin ribonuclease RNase A family 5 (ANG) 5.26 −2.14 
Vanin 2 (VNN2) 5.21 −1.34 
Epstein-Barr virus-induced gene 2 (EBI2) 4.31 −5.13 
Urotensin 2 (UTS2) 5.06 −1.75 
Ribonuclease P RNA component H1 (RPPH1) 4.76 −1.38 
Microsomal glutathione S-transferase 1 (MGST1) 4.75 −1.88 
Interleukin 8 (IL-8) 4.74 −1.08 
Chemokine C-C motif receptor 2 (CCR2) 4.73 −1.25 
Selectin L (SELL) 4.68 −1.84 
Dysferlin limb girdle muscular dystrophy 2B (DYSF) 4.58 −1.72 
Metallothionein 1F (MT1F) 4.57 −1.36 
CD14 antigen (CD14) 4.54 −4.29 
Ribonuclease RNase A family k6 (RNASE6) 3.72 −4.44 
Colony-stimulating factor 3 receptor (CSF3R) 4.38 −1.62 
Stabilin 1 (STAB1) 2.55 −4.35 
Cytochrome P450 family 1 subfamily B polypeptide 1 (CYP1B1) 4.31 −1.16 
Alcohol dehydrogenase iron containing 1 (ADHFE1) 4.29 −1.15 
Phospholipase A2 group VII (PLA2G7) 4.27 −2.98 
Matrix metallopeptidase 25 (MMP25) 4.14 −1.30 
Zinc finger protein 395 (ZNF395) 4.11 −1.57 
Solute carrier family 2 member 3 (SLC2A3) 3.78 −3.96 
Early growth response 1 (EGR1) 3.79 −2.26 
CKLF-like MARVEL transmembrane domain containing 2 (CMTM2) 3.78 −1.15 
CD9 antigen p24 (CD9) 2.60 −3.66 
*

Obtained by calculating the MFI values of classical or nonclassical relative to intermediate.

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