Table 1.

Normalized signal values for selected genes from Affymetrix MOE430A Genechip array




Developmental stage
Protein encoded by gene
Probe ID
CD44- NK1.1-
CD44+ NK1.1-
CD44+ NK1.1+
Cytokines and receptors     
    IFNγ*  1425947   0.460   1.557   8.114  
    IL-13  1420802   2.466   0.459   0.126  
    IL-10   1450330   1.103   1.135   0.559  
    IL-4   1449864   1.276   1.090   0.863  
    IL-21  1450334   1.243   1.104   0.195  
    CD122*  1448759   0.675   1.222   3.986  
Cytotoxicity     
    Granzyme B*  1419060   0.327   1.700   11.41  
    Perforin   1451862   0.585   1.095   1.238  
    FasL*  1449235   0.285   1.695   9.186  
Chemokines and receptors     
    CxCL2 (MIP2α)   1449984   0.354   1.250   1.440  
    CxCL10 (IP10)*  1418930   0.758   1.318   2.187  
    XCL1 (lymphotactin)*  1419412   0.764   2.327   16.53  
    CCL4 (MIP1β)   1421578   0.576   1.285   1.326  
    CCL5 (RANTES)*  1418126   0.438   2.275   40.82  
    CCR1   1419610   0.151   2.087   0.482  
    CCR5*  1424727   0.847   0.999   2.833  
    CCR7  1423466   1.494   0.317   0.068  
    CCR9  1421920   2.591   0.703   0.124  
    CxCR3*  1449925   0.749   1.549   3.937  
    CxCR6   1422812   0.551   1.442   1.399  
NK receptors     
    Klb1c (NK1.1)*  1449570   0.388   1.601   9.780  
    Klrk1 (NKG2D)*  1450495   0.659   1.504   4.387  
    Klrc2/3 (NKG2C)*  1425005   0.107   3.291   24.33  
    Klrd1 (CD94)*  1460245   0.262   1.919   6.639  
    Klra3 (Ly49C)*  1425436   0.254   1.778   3.674  
    Klra5 (Ly49E)*  1420789   0.408   1.935   24.39  
    Klra7 (Ly49G2)*  1426171   0.264   1.822   8.525  
    Klra20 (Ly49T)*  1451942   0.160   1.566   2.644  
    gp49b   1420394   0.561   1.924   1.507  
    CD160*  1420066   0.836   1.455   2.572  
    CD2*  1418770   0.979   0.935   2.252  
    Slamf4 (2B4)*  1449991   0.316   1.525   12.83  
Stat proteins     
    Stat4*  1448713   0.192   1.357   12.53  
    Stat5b   1422103   1.354   0.452   0.615  
Activation/memory     
    Ly6C*  1421571   0.742   1.515   5.230  
    CD44*  1423760   0.357   1.330   2.813  
    CD38*  1433741   0.472   1.309   3.771  
    CD3ζ  1426396   1.181   0.613   0.586  
Transcription factors     
    T-bet*  1449361   0.754   1.316   2.114  
    TCF7 (TCF-1)
 
1433471
 
1.406
 
0.569
 
0.375
 



Developmental stage
Protein encoded by gene
Probe ID
CD44- NK1.1-
CD44+ NK1.1-
CD44+ NK1.1+
Cytokines and receptors     
    IFNγ*  1425947   0.460   1.557   8.114  
    IL-13  1420802   2.466   0.459   0.126  
    IL-10   1450330   1.103   1.135   0.559  
    IL-4   1449864   1.276   1.090   0.863  
    IL-21  1450334   1.243   1.104   0.195  
    CD122*  1448759   0.675   1.222   3.986  
Cytotoxicity     
    Granzyme B*  1419060   0.327   1.700   11.41  
    Perforin   1451862   0.585   1.095   1.238  
    FasL*  1449235   0.285   1.695   9.186  
Chemokines and receptors     
    CxCL2 (MIP2α)   1449984   0.354   1.250   1.440  
    CxCL10 (IP10)*  1418930   0.758   1.318   2.187  
    XCL1 (lymphotactin)*  1419412   0.764   2.327   16.53  
    CCL4 (MIP1β)   1421578   0.576   1.285   1.326  
    CCL5 (RANTES)*  1418126   0.438   2.275   40.82  
    CCR1   1419610   0.151   2.087   0.482  
    CCR5*  1424727   0.847   0.999   2.833  
    CCR7  1423466   1.494   0.317   0.068  
    CCR9  1421920   2.591   0.703   0.124  
    CxCR3*  1449925   0.749   1.549   3.937  
    CxCR6   1422812   0.551   1.442   1.399  
NK receptors     
    Klb1c (NK1.1)*  1449570   0.388   1.601   9.780  
    Klrk1 (NKG2D)*  1450495   0.659   1.504   4.387  
    Klrc2/3 (NKG2C)*  1425005   0.107   3.291   24.33  
    Klrd1 (CD94)*  1460245   0.262   1.919   6.639  
    Klra3 (Ly49C)*  1425436   0.254   1.778   3.674  
    Klra5 (Ly49E)*  1420789   0.408   1.935   24.39  
    Klra7 (Ly49G2)*  1426171   0.264   1.822   8.525  
    Klra20 (Ly49T)*  1451942   0.160   1.566   2.644  
    gp49b   1420394   0.561   1.924   1.507  
    CD160*  1420066   0.836   1.455   2.572  
    CD2*  1418770   0.979   0.935   2.252  
    Slamf4 (2B4)*  1449991   0.316   1.525   12.83  
Stat proteins     
    Stat4*  1448713   0.192   1.357   12.53  
    Stat5b   1422103   1.354   0.452   0.615  
Activation/memory     
    Ly6C*  1421571   0.742   1.515   5.230  
    CD44*  1423760   0.357   1.330   2.813  
    CD38*  1433741   0.472   1.309   3.771  
    CD3ζ  1426396   1.181   0.613   0.586  
Transcription factors     
    T-bet*  1449361   0.754   1.316   2.114  
    TCF7 (TCF-1)
 
1433471
 
1.406
 
0.569
 
0.375
 
*

Genes up-regulated in stage 2 or stage 3 relative to stage 1.

Genes down-regulated in stage 2 or stage 3 relative to stage 1.

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