Table 3.

Selected genes showing significant regulation in CD8+ DCs at 4 and 16 hours in response to IFN-γ


Probe ID

Gene symbol

Gene name

Functional category

Fold change, 4 h

Fold change, 16 h
97731_at* Indo  Indoleamine-pyrrole 2,3 dioxygenase   Tryptophan metabolism   +4.3   –1.1  
98606_s_at  Wars  Tryptophanyl-tRNA synthetase   Tryptophan metabolism   +3.5   +2.6  
101465_at  Stat1  Signal transducer and activator of transcription 1   Signal transduction; Transcription factor   +1.8   +1.5  
102401_at  Irf1  IFN regulatory factor 1   Transcription factor   +2.0   +2.0  
98002_at  Icsbp1  IFN consensus sequence binding protein 1   Transcription factor   +1.5   +1.8  
92832_at  Socs1  Suppressor of cytokine signaling 1   Signal transduction   +2.6   +3.2  
103486_15  Il1b  IL-1β   Cytokine   –1.7   –2.1  
104388_at  Ccl9  Chemokine (C-C motif) ligand 9 (MIP-1γ)   Chemokine   –1.6   –4.6  
102310_at  Ccl22  Chemokine (C-C motif) ligand 22 (MDC;STCP-1;ABCD-1)   Chemokine   –1.2   –1.6  
101436_at  Cxcl9  Chemokine (C-X-C motif) ligand 9 (MIG)   Chemokine   +27.8   +22.6  
93858_at  Cxcl10  Chemokine (C-X-C motif) ligand 10 (IP-10)   Chemokine   +6.0   +3.0  
104354_at  Csf1r  Colony-stimulating factor 1 receptor   Cytokine receptor   –1.7   –1.3  
95295_at  Flt3  FMS-like tyrosine kinase 3   Cytokine receptor   –1.2   –1.4  
92689_at  Il18bp  IL-18 binding protein   Cytokine binding protein   +1.4   +2.3  
92962_at  Tnfrsf5  Tumor necrosis factor receptor superfamily, member 5 (CD40)   Activating receptor   +1.6   +1.3  
98088_at  Cd14  CD14 antigen   Activating receptor   –1.8   –2.8  
104023_at  Igsf7  Immunoglobulin superfamily, member 7 (MAIR II)   Activating receptor   –2.0   –1.8  
100397_at  Tyrobp  TYRO protein tyrosine kinase binding protein (DAP12)   Adapter molecule   –1.3   –1.3  
95951_at  Clecsf8  c-Type lectin, superfamily member 8   Endocytic receptor   –1.6   –2.0  
96886_at  Stab1  Stabilin 1   Endocytic receptor   –1.5   –2.0  
100611_at  Lyzs  Lysozyme   APM   –1.6   –1.7  
103035_at  Tap1  Transporter 1, ATP-binding cassette subfamily B   APM   +1.6   +1.7  
93085_at  Psmb9  Proteasome subunit, β type 9 (Imp2)   APM   +1.3   +1.4  
101486_at  Psmb10  Proteasome subunit, β type 10 (Imp10)   APM   +1.2   +1.4  
101019_at  Ctsc  Cathepsin C   APM   +1.4   +1.4  
101963_at
 
Ctsl
 
Cathepsin L
 
APM
 
–1.6
 
–2.8
 

Probe ID

Gene symbol

Gene name

Functional category

Fold change, 4 h

Fold change, 16 h
97731_at* Indo  Indoleamine-pyrrole 2,3 dioxygenase   Tryptophan metabolism   +4.3   –1.1  
98606_s_at  Wars  Tryptophanyl-tRNA synthetase   Tryptophan metabolism   +3.5   +2.6  
101465_at  Stat1  Signal transducer and activator of transcription 1   Signal transduction; Transcription factor   +1.8   +1.5  
102401_at  Irf1  IFN regulatory factor 1   Transcription factor   +2.0   +2.0  
98002_at  Icsbp1  IFN consensus sequence binding protein 1   Transcription factor   +1.5   +1.8  
92832_at  Socs1  Suppressor of cytokine signaling 1   Signal transduction   +2.6   +3.2  
103486_15  Il1b  IL-1β   Cytokine   –1.7   –2.1  
104388_at  Ccl9  Chemokine (C-C motif) ligand 9 (MIP-1γ)   Chemokine   –1.6   –4.6  
102310_at  Ccl22  Chemokine (C-C motif) ligand 22 (MDC;STCP-1;ABCD-1)   Chemokine   –1.2   –1.6  
101436_at  Cxcl9  Chemokine (C-X-C motif) ligand 9 (MIG)   Chemokine   +27.8   +22.6  
93858_at  Cxcl10  Chemokine (C-X-C motif) ligand 10 (IP-10)   Chemokine   +6.0   +3.0  
104354_at  Csf1r  Colony-stimulating factor 1 receptor   Cytokine receptor   –1.7   –1.3  
95295_at  Flt3  FMS-like tyrosine kinase 3   Cytokine receptor   –1.2   –1.4  
92689_at  Il18bp  IL-18 binding protein   Cytokine binding protein   +1.4   +2.3  
92962_at  Tnfrsf5  Tumor necrosis factor receptor superfamily, member 5 (CD40)   Activating receptor   +1.6   +1.3  
98088_at  Cd14  CD14 antigen   Activating receptor   –1.8   –2.8  
104023_at  Igsf7  Immunoglobulin superfamily, member 7 (MAIR II)   Activating receptor   –2.0   –1.8  
100397_at  Tyrobp  TYRO protein tyrosine kinase binding protein (DAP12)   Adapter molecule   –1.3   –1.3  
95951_at  Clecsf8  c-Type lectin, superfamily member 8   Endocytic receptor   –1.6   –2.0  
96886_at  Stab1  Stabilin 1   Endocytic receptor   –1.5   –2.0  
100611_at  Lyzs  Lysozyme   APM   –1.6   –1.7  
103035_at  Tap1  Transporter 1, ATP-binding cassette subfamily B   APM   +1.6   +1.7  
93085_at  Psmb9  Proteasome subunit, β type 9 (Imp2)   APM   +1.3   +1.4  
101486_at  Psmb10  Proteasome subunit, β type 10 (Imp10)   APM   +1.2   +1.4  
101019_at  Ctsc  Cathepsin C   APM   +1.4   +1.4  
101963_at
 
Ctsl
 
Cathepsin L
 
APM
 
–1.6
 
–2.8
 

Fold change data from 1 of 2 representative microarray experiments (GEO accession no. GSE3337).

*

Not significant from the analysis. APM indicates antigen-processing machinery

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