Table 3.

Combination of primer sets for single-cell heminested RT-PCR



PCR primers, sense/antisense
Transcript type
First-stage PCR
Second-stage PCR
AID 5′   AID 5′/AID 3′   AID 5′/AID 3′int  
AID 3′   AID 5′/AID 3′   AID 5′int/AID 3′  
Clonotypic   FRIc/Cμ   CDR2/CDR3  
β2m, control
 
β2m 5′/β2m 3′
 
β2m 5′int/β2m 3′
 


PCR primers, sense/antisense
Transcript type
First-stage PCR
Second-stage PCR
AID 5′   AID 5′/AID 3′   AID 5′/AID 3′int  
AID 3′   AID 5′/AID 3′   AID 5′int/AID 3′  
Clonotypic   FRIc/Cμ   CDR2/CDR3  
β2m, control
 
β2m 5′/β2m 3′
 
β2m 5′int/β2m 3′
 
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