Top 10 fold down-regulated genes
| Cluster/probe set . | Gene symbol . | Fold change . |
|---|---|---|
| CD-2 | ||
| 219463_at | C20orf103 | 0.10 |
| 200953_s_at | CCND2 | 0.13 |
| 205159_at | CSF2RB | 0.14 |
| 205968_at | KCNS3 | 0.15 |
| 226333_at | IL6R | 0.15 |
| 204489_s_at | CD44 | 0.16 |
| 201387_s_at | UCHL1 | 0.18 |
| 212063_at | CD44 | 0.18 |
| 238021_s_at | hCG_1815491 | 0.19 |
| 219954_s_at | GBA3 | 0.20 |
| CD-1 | ||
| 201005_at | CD9 | 0.08 |
| 205352_at | SERPINI1 | 0.17 |
| 205239_at | AREG, LOC727738 | 0.18 |
| 222392_x_at | PERP | 0.19 |
| 213737_x_at | GOLGA9P | 0.26 |
| 211071_s_at | MLLT11 | 0.26 |
| 227067_x_at | NOTCH2NL | 0.26 |
| 204647_at | HOMER3 | 0.27 |
| 208078_s_at | SNF1LK | 0.28 |
| CTA | ||
| 200643_at | HDLBP | 0.07 |
| 201024_x_at | EIF5B | 0.10 |
| 212586_at | CAST | 0.11 |
| 203675_at | NUCB2 | 0.11 |
| 200977_s_at | TAX1BP1 | 0.12 |
| 224567_x_at | MALAT1 | 0.12 |
| 211968_s_at | HSP90AA1 | 0.12 |
| 200595_s_at | EIF3A | 0.13 |
| 210645_s_at | TTC3 | 0.13 |
| 219221_at | ZBTB38 | 0.14 |
| NFκB | ||
| 206978_at | CCR2, FLJ78302 | 0.07 |
| 212731_at | ANKRD46 | 0.07 |
| 200768_s_at | MAT2A | 0.10 |
| 231576_at | 0.11 | |
| 202797_at | SACM1L | 0.12 |
| 209296_at | PPM1B | 0.12 |
| 213005_s_at | KANK1 | 0.13 |
| 201503_at | G3BP1 | 0.14 |
| 201664_at | SMC4 | 0.15 |
| 201098_at | COPB2 | 0.19 |
| HY | ||
| 200953_s_at | CCND2 | 0.12 |
| 219799_s_at | DHRS9 | 0.18 |
| 203186_s_at | S100A4 | 0.19 |
| 201029_s_at | CD99 | 0.19 |
| 225673_at | MYADM | 0.20 |
| 201666_at | TIMP1 | 0.22 |
| 224009_x_at | DHRS9 | 0.22 |
| 205229_s_at | COCH | 0.23 |
| 200951_s_at | CCND2 | 0.23 |
| 223952_x_at | DHRS9 | 0.24 |
| PRL3 | ||
| 201721_s_at | LAPTM5 | 0.04 |
| 212063_at | CD44 | 0.04 |
| 204489_s_at | CD44 | 0.08 |
| 216438_s_at | TMSB4X, TMSL3 | 0.16 |
| 208892_s_at | DUSP6 | 0.19 |
| 208690_s_at | PDLIM1 | 0.20 |
| 225282_at | SMAP2 | 0.28 |
| 201432_at | CAT | 0.34 |
| 201300_s_at | PRNP | 0.40 |
| PR | ||
| 215001_s_at | GLUL | 0.10 |
| 206150_at | CD27 | 0.11 |
| 209201_x_at | CXCR4 | 0.13 |
| 235400_at | FCRLA | 0.13 |
| 211919_s_at | CXCR4 | 0.14 |
| 205671_s_at | HLA-DOB | 0.15 |
| 209619_at | CD74 | 0.15 |
| 228284_at | TLE1 | 0.15 |
| 210889_s_at | FCGR2B | 0.16 |
| 235372_at | FCRLA | 0.16 |
| MF | ||
| 204602_at | DKK1 | 0.05 |
| 226702_at | CMPK2 | 0.06 |
| 202391_at | BASP1 | 0.10 |
| 203698_s_at | FRZB | 0.11 |
| 216576_x_at | IGKC, IGKV1-5, LOC647506 | 0.12 |
| 215176_x_at | LOC100130100 | 0.12 |
| 202688_at | TNFSF10 | 0.13 |
| 225681_at | CTHRC1 | 0.13 |
| 203697_at | FRZB | 0.13 |
| 242625_at | RSAD2 | 0.14 |
| MS | ||
| 208712_at | CCND1 | 0.12 |
| 203698_s_at | FRZB | 0.19 |
| 203697_at | FRZB | 0.19 |
| 228592_at | MS4A1 | 0.20 |
| 201721_s_at | LAPTM5 | 0.20 |
| 221969_at | 0.21 | |
| 206609_at | MAGEC1 | 0.22 |
| 204794_at | DUSP2 | 0.23 |
| 226068_at | SYK | 0.23 |
| 243780_at | 0.25 | |
| Myeloid | ||
| 200730_s_at | PTP4A1 | 0.42 |
| 218826_at | SLC35F2 | 0.43 |
| 210942_s_at | ST3GAL6 | 0.47 |
| 227189_at | CPNE5 | 0.48 |
| 206445_s_at | PRMT1 | 0.50 |
| 214359_s_at | HSP90AB1 | 0.51 |
| 209457_at | DUSP5 | 0.51 |
| 204790_at | SMAD7 | 0.51 |
| 211967_at | TMEM123 | 0.52 |
| 226612_at | FLJ25076 | 0.52 |
| Cluster/probe set . | Gene symbol . | Fold change . |
|---|---|---|
| CD-2 | ||
| 219463_at | C20orf103 | 0.10 |
| 200953_s_at | CCND2 | 0.13 |
| 205159_at | CSF2RB | 0.14 |
| 205968_at | KCNS3 | 0.15 |
| 226333_at | IL6R | 0.15 |
| 204489_s_at | CD44 | 0.16 |
| 201387_s_at | UCHL1 | 0.18 |
| 212063_at | CD44 | 0.18 |
| 238021_s_at | hCG_1815491 | 0.19 |
| 219954_s_at | GBA3 | 0.20 |
| CD-1 | ||
| 201005_at | CD9 | 0.08 |
| 205352_at | SERPINI1 | 0.17 |
| 205239_at | AREG, LOC727738 | 0.18 |
| 222392_x_at | PERP | 0.19 |
| 213737_x_at | GOLGA9P | 0.26 |
| 211071_s_at | MLLT11 | 0.26 |
| 227067_x_at | NOTCH2NL | 0.26 |
| 204647_at | HOMER3 | 0.27 |
| 208078_s_at | SNF1LK | 0.28 |
| CTA | ||
| 200643_at | HDLBP | 0.07 |
| 201024_x_at | EIF5B | 0.10 |
| 212586_at | CAST | 0.11 |
| 203675_at | NUCB2 | 0.11 |
| 200977_s_at | TAX1BP1 | 0.12 |
| 224567_x_at | MALAT1 | 0.12 |
| 211968_s_at | HSP90AA1 | 0.12 |
| 200595_s_at | EIF3A | 0.13 |
| 210645_s_at | TTC3 | 0.13 |
| 219221_at | ZBTB38 | 0.14 |
| NFκB | ||
| 206978_at | CCR2, FLJ78302 | 0.07 |
| 212731_at | ANKRD46 | 0.07 |
| 200768_s_at | MAT2A | 0.10 |
| 231576_at | 0.11 | |
| 202797_at | SACM1L | 0.12 |
| 209296_at | PPM1B | 0.12 |
| 213005_s_at | KANK1 | 0.13 |
| 201503_at | G3BP1 | 0.14 |
| 201664_at | SMC4 | 0.15 |
| 201098_at | COPB2 | 0.19 |
| HY | ||
| 200953_s_at | CCND2 | 0.12 |
| 219799_s_at | DHRS9 | 0.18 |
| 203186_s_at | S100A4 | 0.19 |
| 201029_s_at | CD99 | 0.19 |
| 225673_at | MYADM | 0.20 |
| 201666_at | TIMP1 | 0.22 |
| 224009_x_at | DHRS9 | 0.22 |
| 205229_s_at | COCH | 0.23 |
| 200951_s_at | CCND2 | 0.23 |
| 223952_x_at | DHRS9 | 0.24 |
| PRL3 | ||
| 201721_s_at | LAPTM5 | 0.04 |
| 212063_at | CD44 | 0.04 |
| 204489_s_at | CD44 | 0.08 |
| 216438_s_at | TMSB4X, TMSL3 | 0.16 |
| 208892_s_at | DUSP6 | 0.19 |
| 208690_s_at | PDLIM1 | 0.20 |
| 225282_at | SMAP2 | 0.28 |
| 201432_at | CAT | 0.34 |
| 201300_s_at | PRNP | 0.40 |
| PR | ||
| 215001_s_at | GLUL | 0.10 |
| 206150_at | CD27 | 0.11 |
| 209201_x_at | CXCR4 | 0.13 |
| 235400_at | FCRLA | 0.13 |
| 211919_s_at | CXCR4 | 0.14 |
| 205671_s_at | HLA-DOB | 0.15 |
| 209619_at | CD74 | 0.15 |
| 228284_at | TLE1 | 0.15 |
| 210889_s_at | FCGR2B | 0.16 |
| 235372_at | FCRLA | 0.16 |
| MF | ||
| 204602_at | DKK1 | 0.05 |
| 226702_at | CMPK2 | 0.06 |
| 202391_at | BASP1 | 0.10 |
| 203698_s_at | FRZB | 0.11 |
| 216576_x_at | IGKC, IGKV1-5, LOC647506 | 0.12 |
| 215176_x_at | LOC100130100 | 0.12 |
| 202688_at | TNFSF10 | 0.13 |
| 225681_at | CTHRC1 | 0.13 |
| 203697_at | FRZB | 0.13 |
| 242625_at | RSAD2 | 0.14 |
| MS | ||
| 208712_at | CCND1 | 0.12 |
| 203698_s_at | FRZB | 0.19 |
| 203697_at | FRZB | 0.19 |
| 228592_at | MS4A1 | 0.20 |
| 201721_s_at | LAPTM5 | 0.20 |
| 221969_at | 0.21 | |
| 206609_at | MAGEC1 | 0.22 |
| 204794_at | DUSP2 | 0.23 |
| 226068_at | SYK | 0.23 |
| 243780_at | 0.25 | |
| Myeloid | ||
| 200730_s_at | PTP4A1 | 0.42 |
| 218826_at | SLC35F2 | 0.43 |
| 210942_s_at | ST3GAL6 | 0.47 |
| 227189_at | CPNE5 | 0.48 |
| 206445_s_at | PRMT1 | 0.50 |
| 214359_s_at | HSP90AB1 | 0.51 |
| 209457_at | DUSP5 | 0.51 |
| 204790_at | SMAD7 | 0.51 |
| 211967_at | TMEM123 | 0.52 |
| 226612_at | FLJ25076 | 0.52 |
Per cluster, the top 10 down-regulated genes are shown. The first column shows the cluster and probe set IDs, the second column shows the gene symbols, and the third column indicates the fold change differences of per probe set in the specific cluster versus the remaining clusters.
CTA indicates cancer testis antigens; HY, hyperdiploid cluster; NFκB, nuclear factor kappa light-chain-enhancer of activated B cells; and PR, proliferation-associated genes.