Genomic loci with homozygous deletions and target genes in MCL
| Cytoband/sample . | Start (kb) . | End (kb) . | Size (kb) . | No. of SNPs . | No. of genes . | Genes with no expression . |
|---|---|---|---|---|---|---|
| 1p32.3 | ||||||
| UPN1 | 50 465.6 | 52 103.6 | 1638.0 | 29 | 7 | FAF1, CDKN2C |
| 2q12.1 | ||||||
| MINO | 111 333.1 | 112 182.9 | 849.8 | 29 | 2 | ACOXL, BCL2L11 |
| JEKO1 | 110 286.5 | 112 155.1 | 1868.5 | 31 | 7 | ACOXL, BCL2L11 |
| Z138 | 111 517.6 | 111 623.9 | 106.3 | 5 | 2 | ACOXL, BCL2L11 |
| 2q34 | ||||||
| UPN1 | 210 048.3 | 210 472.0 | 423.6 | 36 | 1 | MAP2 |
| 2q37 | ||||||
| MINO | 230 936.6 | 231 248.6 | 312.1 | 26 | 1 | SP100 |
| JEKO1 | 231 008.8 | 231 248.6 | 239.8 | 18 | 1 | SP100 |
| 9p21.1 | ||||||
| MAVER1 | 28 761.5 | 30 316.1 | 1554.6 | 163 | 0* | — |
| 9p21.2 | ||||||
| MAVER1 | 27 316.8 | 27 758.4 | 441.6 | 41 | 3 | MOBKL2B |
| 9p21.3 | ||||||
| MAVER1 | 21 762.3 | 22 102.6 | 340.3 | 21 | 3 | MTAP, CDKN2A |
| GRANTA519 | 21 204.9 | 22 519.4 | 1314.5 | 68 | 12 | MTAP, CDKN2A |
| HBL2 | 21 948.5 | 22 102.6 | 154.1 | 12 | 2 | CDKN2A |
| REC1 | 21 948.5 | 22 404.6 | 456.1 | 16 | 2 | CDKN2A |
| Z138 | 21 844.2 | 22 449.0 | 604.8 | 26 | 4 | CDKN2A |
| MCL9 | 21 204.9 | 24 209.7 | 3004.8 | 183 | 14 | MTAP, CDKN2A |
| MCL17 | 20 835.8 | 23 113.2 | 2277.4 | 133 | 22 | ND |
| 13q14.2 | ||||||
| UPN1 | 47 812.8 | 47 817.9 | 5.1 | 6 | 2 | RB1 |
| 13q33.1 | ||||||
| JEKO1 | 101 593.7 | 101 930.8 | 337.1 | 29 | 1† | — |
| 18q22.1 | ||||||
| UPN1 | 63 097.6 | 63 530.9 | 433.3 | 33 | 1† | — |
| 22q11.22 | ||||||
| GRANTA519 | 20 831.6 | 21 479.1 | 647.5 | 21 | 5 | ZNF280A, PRAME |
| HBL2 | 20 831.6 | 21 479.1 | 647.5 | 21 | 5 | ZNF280A, PRAME |
| MCL11 | 21 000.1 | 21 479.1 | 479.1 | 19 | 4 | ZNF280A, PRAME |
| MCL20 | 20 830.9 | 21 270.4 | 439.6 | 18 | 4 | ND |
| Cytoband/sample . | Start (kb) . | End (kb) . | Size (kb) . | No. of SNPs . | No. of genes . | Genes with no expression . |
|---|---|---|---|---|---|---|
| 1p32.3 | ||||||
| UPN1 | 50 465.6 | 52 103.6 | 1638.0 | 29 | 7 | FAF1, CDKN2C |
| 2q12.1 | ||||||
| MINO | 111 333.1 | 112 182.9 | 849.8 | 29 | 2 | ACOXL, BCL2L11 |
| JEKO1 | 110 286.5 | 112 155.1 | 1868.5 | 31 | 7 | ACOXL, BCL2L11 |
| Z138 | 111 517.6 | 111 623.9 | 106.3 | 5 | 2 | ACOXL, BCL2L11 |
| 2q34 | ||||||
| UPN1 | 210 048.3 | 210 472.0 | 423.6 | 36 | 1 | MAP2 |
| 2q37 | ||||||
| MINO | 230 936.6 | 231 248.6 | 312.1 | 26 | 1 | SP100 |
| JEKO1 | 231 008.8 | 231 248.6 | 239.8 | 18 | 1 | SP100 |
| 9p21.1 | ||||||
| MAVER1 | 28 761.5 | 30 316.1 | 1554.6 | 163 | 0* | — |
| 9p21.2 | ||||||
| MAVER1 | 27 316.8 | 27 758.4 | 441.6 | 41 | 3 | MOBKL2B |
| 9p21.3 | ||||||
| MAVER1 | 21 762.3 | 22 102.6 | 340.3 | 21 | 3 | MTAP, CDKN2A |
| GRANTA519 | 21 204.9 | 22 519.4 | 1314.5 | 68 | 12 | MTAP, CDKN2A |
| HBL2 | 21 948.5 | 22 102.6 | 154.1 | 12 | 2 | CDKN2A |
| REC1 | 21 948.5 | 22 404.6 | 456.1 | 16 | 2 | CDKN2A |
| Z138 | 21 844.2 | 22 449.0 | 604.8 | 26 | 4 | CDKN2A |
| MCL9 | 21 204.9 | 24 209.7 | 3004.8 | 183 | 14 | MTAP, CDKN2A |
| MCL17 | 20 835.8 | 23 113.2 | 2277.4 | 133 | 22 | ND |
| 13q14.2 | ||||||
| UPN1 | 47 812.8 | 47 817.9 | 5.1 | 6 | 2 | RB1 |
| 13q33.1 | ||||||
| JEKO1 | 101 593.7 | 101 930.8 | 337.1 | 29 | 1† | — |
| 18q22.1 | ||||||
| UPN1 | 63 097.6 | 63 530.9 | 433.3 | 33 | 1† | — |
| 22q11.22 | ||||||
| GRANTA519 | 20 831.6 | 21 479.1 | 647.5 | 21 | 5 | ZNF280A, PRAME |
| HBL2 | 20 831.6 | 21 479.1 | 647.5 | 21 | 5 | ZNF280A, PRAME |
| MCL11 | 21 000.1 | 21 479.1 | 479.1 | 19 | 4 | ZNF280A, PRAME |
| MCL20 | 20 830.9 | 21 270.4 | 439.6 | 18 | 4 | ND |