Table 1

List of (putative) transcription factors identified as early induced by retinoic acid in NB4 cells

Gene symbolFull nameAccession no.Direct target of retinoic acid*Expressed in myeloid tissueReference(s)
CEBPB CAAT/enhancer binding protein, beta NM_005194 Yes Yes Duprez et al 
CHOP C/EBP-homologous protein NM_004083 Yes Yes Gery et al16  
ID1 Inhibitor of DNA-binding 1 NM_002165 Yes Yes Nigten et al17 ; Jankovic et al18  
ID2 Inhibitor of DNA-binding 2 NM_002166 Yes Yes Nigten et al17  
IRF1 Interferon regulatory factor 1 NM_002198 Yes Yes Matikainen et al19  
BHLHB2 Basic helix-loop-helix domain containing, class B, 2 NM_003670 Yes ?§ Boudjelal et al20  
ZC3H12A Zinc-finger CCCH-type containing 12A NM_025079 Yes Zhou et al21 ; Liang et al22  
ZNF767 Zinc-finger containing protein 767 NM_024910  
CXXC5 (RINF) CXXC zinc-finger 5 (retinoid-inducible nuclear factor) NM_016463  
Gene symbolFull nameAccession no.Direct target of retinoic acid*Expressed in myeloid tissueReference(s)
CEBPB CAAT/enhancer binding protein, beta NM_005194 Yes Yes Duprez et al 
CHOP C/EBP-homologous protein NM_004083 Yes Yes Gery et al16  
ID1 Inhibitor of DNA-binding 1 NM_002165 Yes Yes Nigten et al17 ; Jankovic et al18  
ID2 Inhibitor of DNA-binding 2 NM_002166 Yes Yes Nigten et al17  
IRF1 Interferon regulatory factor 1 NM_002198 Yes Yes Matikainen et al19  
BHLHB2 Basic helix-loop-helix domain containing, class B, 2 NM_003670 Yes ?§ Boudjelal et al20  
ZC3H12A Zinc-finger CCCH-type containing 12A NM_025079 Yes Zhou et al21 ; Liang et al22  
ZNF767 Zinc-finger containing protein 767 NM_024910  
CXXC5 (RINF) CXXC zinc-finger 5 (retinoid-inducible nuclear factor) NM_016463  
*

As suggested in the literature by at least cycloheximide experiment (not necessarily for the presence of a putative retinoid-responsive element in the gene promoter).

CEBPB would be a direct target of retinoic acid in PML-RARα expressing cells (ie, in APL cells but apparently not in other cells).

As suggested at least by Northern blot, RT-PCR, and/or Western blot experiments (data that are only based on microarray experiments were not considered here).

§

A question mark (?) indicates that there is no evidence in the literature to our knowledge.

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